Browse Element(s) Details


Os.55121.1.S1_at

Description gb:AK107525.1
DB_XREF= gi:32992734
TID=Os.55121.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55121 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-G01, full insert sequence.
FL= gb:AK107525.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4748010/11Transcription factor TFIIB repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47442Os.53556.1.S1_at11/115+27094745..27095344expressed protein
LOC_Os05g47446Os.12289.1.S1_at10/115+27095954..27100503Double-stranded DNA-binding domain containing protein, expressed
LOC_Os05g47450OsAffx.20387.1.S1_x_at1/115+27103088..27109143retrotransposon protein, putative, unclassified
LOC_Os05g47450OsAffx.10632.1.S1_at1/115+27103088..27109143retrotransposon protein, putative, unclassified
LOC_Os05g47460NANA5+27110507..27113179hypothetical protein
LOC_Os05g47470Os.5815.1.S1_at11/115+27114902..27116123expressed protein
LOC_Os05g47480Os.55121.1.S1_at10/115+27117833..27119322Transcription factor TFIIB repeat family protein, expressed
LOC_Os05g47490Os.47886.1.S1_at11/115+27120348..27126986multidrug resistance protein 1 homolog, putative, expressed
LOC_Os05g47500OsAffx.15135.1.S1_at11/115+27128642..27134296multidrug resistance protein 1 homolog, putative, expressed
LOC_Os05g47510OsAffx.27351.1.S1_at11/115+27135744..27137066hypothetical protein
LOC_Os05g47520OsAffx.15136.1.S1_at11/115+27139430..27140372hypothetical protein
LOC_Os05g47530Os.51330.1.S1_at11/115+27141585..27143907Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os05g47530OsAffx.27352.1.S1_at9/115+27141585..27143907Uncharacterized BCR, COG1963 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003702molecular_functionRNA polymerase II transcription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55121.1.S1_at--418--4211Chr05:27118221..27118245 (25 bp)
CCGCCATTGATTCTTGGGTTCTTGG
LOC_Os05g47480
Os.55121.1.S1_at--480--5671Chr05:27118184..27118208 (25 bp)
GACATGCCAATGTCTTTCGACTTGG
LOC_Os05g47480
Os.55121.1.S1_at--18--7351Chr05:27118144..27118168 (25 bp)
GTGAACTTCGTTTCGTTAATCCGTG
LOC_Os05g47480
Os.55121.1.S1_at--904--3591Chr05:27118079..27118103 (25 bp)
CTTGGTTTCGTTAATCCGTGCTTGA
LOC_Os05g47480
Os.55121.1.S1_at--431--3851NONE
CTGACGAACCGGATTTGGACCTGTT
NONE
Os.55121.1.S1_at--1153--1751Chr05:27118019..27118044 (25 bp)
ACCTGTTTCGTTAATCCGTGCTTGA
LOC_Os05g47480
Os.55121.1.S1_at--982--271Chr05:27117962..27117986 (25 bp)
ATAGAGATGCTGTTGCTCATTGCTC
LOC_Os05g47480
Os.55121.1.S1_at--657--10711Chr05:27117950..27117974 (25 bp)
TTGCTCATTGCTCGTATTCGGGAAT
LOC_Os05g47480
Os.55121.1.S1_at--99--931Chr05:27117908..27117932 (25 bp)
AGGCATCTGTTGCATGACCTCGGAA
LOC_Os05g47480
Os.55121.1.S1_at--561--8931Chr05:27117894..27117918 (25 bp)
TGACCTCGGAAACGTGAAGCCTGTT
LOC_Os05g47480
Os.55121.1.S1_at--1002--5411Chr05:27117879..27117903 (25 bp)
GAAGCCTGTTCTTGCGAGACAATCT
LOC_Os05g47480
Target Sequence 
CCGCCATTGATTCTTGGGTTCTTGGCATGTGTTCGACGACATGCCAATGTCTTTCGACTTGGACATGTGGAGTTCATGTG
AACTTCGTTTCGTTAATCCGTGCTTGATTCGTTCTGTTTCAAGCTGACGAACCGAATTTGGACTTGGTTTCGTTAATCCG
TGCTTGATTCATTCGGTCTCAAGCTGACGAACCGGATTTGGACCTGTTTCGTTAATCCGTGCTTGATTCGTTCGGTTTCA
AGCTGACGAACCTAATAGATAGAGATGCTGTTGCTCATTGCTCGTATTCGGGAATGAGCTGATTAACGTTAGAGGCATCT
GTTGCATGACCTCGGAAACGTGAAGCCTGTTCTTGCGAGACAATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55121.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis