Browse Element(s) Details


Os.5815.1.S1_at

Description gb:AK060333.1
DB_XREF= gi:32970351
TID=Os.5815.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5815 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023113L22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-008-B08, full insert sequence.
FL= gb:AK060333.1 gb:AK100682.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4747011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47442Os.53556.1.S1_at11/115+27094745..27095344expressed protein
LOC_Os05g47446Os.12289.1.S1_at10/115+27095954..27100503Double-stranded DNA-binding domain containing protein, expressed
LOC_Os05g47450OsAffx.20387.1.S1_x_at1/115+27103088..27109143retrotransposon protein, putative, unclassified
LOC_Os05g47450OsAffx.10632.1.S1_at1/115+27103088..27109143retrotransposon protein, putative, unclassified
LOC_Os05g47460NANA5+27110507..27113179hypothetical protein
LOC_Os05g47470Os.5815.1.S1_at11/115+27114902..27116123expressed protein
LOC_Os05g47480Os.55121.1.S1_at10/115+27117833..27119322Transcription factor TFIIB repeat family protein, expressed
LOC_Os05g47490Os.47886.1.S1_at11/115+27120348..27126986multidrug resistance protein 1 homolog, putative, expressed
LOC_Os05g47500OsAffx.15135.1.S1_at11/115+27128642..27134296multidrug resistance protein 1 homolog, putative, expressed
LOC_Os05g47510OsAffx.27351.1.S1_at11/115+27135744..27137066hypothetical protein
LOC_Os05g47520OsAffx.15136.1.S1_at11/115+27139430..27140372hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5815.1.S1_at--1134--7471Chr05:27115748..27115772 (25 bp)
GTGGTCATCCTTCACCTGAAGAGGT
LOC_Os05g47470
Os.5815.1.S1_at--437--1031Chr05:27115769..27115793 (25 bp)
AGGTAATCTGGTGCTGTGACGCGTA
LOC_Os05g47470
Os.5815.1.S1_at--862--1451Chr05:27115794..27115818 (25 bp)
AGAAGTTTTGGTCTGCTGCTATGGC
LOC_Os05g47470
Os.5815.1.S1_at--1041--8271Chr05:27115816..27115840 (25 bp)
GGCTTACATGAGATTGGATTACCCC
LOC_Os05g47470
Os.5815.1.S1_at--6--151Chr05:27115875..27115899 (25 bp)
ATTACTTTAGCATTCCACTCGCTAG
LOC_Os05g47470
Os.5815.1.S1_at--888--4931Chr05:27115884..27115908 (25 bp)
GCATTCCACTCGCTAGCATTTAGAG
LOC_Os05g47470
Os.5815.1.S1_at--210--5691Chr05:27115924..27115948 (25 bp)
GACTTATCGTGAGTCCGTTTCGGTT
LOC_Os05g47470
Os.5815.1.S1_at--1134--9431Chr05:27115943..27115967 (25 bp)
TCGGTTCTGCATCCTCACATGGTAA
LOC_Os05g47470
Os.5815.1.S1_at--162--171Chr05:27116023..27116047 (25 bp)
ATTTTGGTGCTGTACTGATTTTTAA
LOC_Os05g47470
Os.5815.1.S1_at--197--1971Chr05:27116036..27116060 (25 bp)
ACTGATTTTTAATTCTGTCCCATGG
LOC_Os05g47470
Os.5815.1.S1_at--490--3151Chr05:27116046..27116070 (25 bp)
AATTCTGTCCCATGGATTCTTGCAT
LOC_Os05g47470
Target Sequence 
GTGGTCATCCTTCACCTGAAGAGGTAATCTGGTGCTGTGACGCGTAAGAAGTTTTGGTCTGCTGCTATGGCTTACATGAG
ATTGGATTACCCCCTTTTGCCGTGGTGCTGGTATTACTGGAGGTANNNATATTACTTTAGCATTCCACTCGCTAGCATTT
AGAGTCCTAGAGAGGTGGAGACTTATCGTGAGTCCGTTTCGGTTCTGCATCCTCACATGGTAATAAGAATGTCAAGACAA
TTCTGAGTGAGACGCATGTGGTTGTGTTATGTTATGTTATTTTGGTGCTGTACTGATTTTTAATTCTGTCCCATGGATTC
TTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5815.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis