Browse Element(s) Details


OsAffx.15136.1.S1_at

Description tigr:9633.m04424
TID=OsAffx.15136.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4752011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47470Os.5815.1.S1_at11/115+27114902..27116123expressed protein
LOC_Os05g47480Os.55121.1.S1_at10/115+27117833..27119322Transcription factor TFIIB repeat family protein, expressed
LOC_Os05g47490Os.47886.1.S1_at11/115+27120348..27126986multidrug resistance protein 1 homolog, putative, expressed
LOC_Os05g47500OsAffx.15135.1.S1_at11/115+27128642..27134296multidrug resistance protein 1 homolog, putative, expressed
LOC_Os05g47510OsAffx.27351.1.S1_at11/115+27135744..27137066hypothetical protein
LOC_Os05g47520OsAffx.15136.1.S1_at11/115+27139430..27140372hypothetical protein
LOC_Os05g47530Os.51330.1.S1_at11/115+27141585..27143907Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os05g47530OsAffx.27352.1.S1_at9/115+27141585..27143907Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os05g47540Os.17921.1.S1_at11/115+27146140..27150431Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os05g47550Os.8798.1.S1_at11/115+27153385..27160178Clathrin assembly protein, putative, expressed
LOC_Os05g47560Os.38365.1.S1_a_at11/115+27162057..27166164Serine/threonine-protein kinase SNT7, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15136.1.S1_at--996--7371Chr05:27139935..27139959 (25 bp)
GTGACCGTGGCTTCGGAGACGACAA
LOC_Os05g47520
OsAffx.15136.1.S1_at--748--5991Chr05:27139920..27139944 (25 bp)
GAGACGACAACATTGCCATCCTGAG
LOC_Os05g47520
OsAffx.15136.1.S1_at--212--4511Chr05:27139855..27139879 (25 bp)
GCCGTTCTTCAACCTTGGTATCATG
LOC_Os05g47520
OsAffx.15136.1.S1_at--1107--7851Chr05:27139839..27139863 (25 bp)
GGTATCATGTCGACTTCAGGCTTCA
LOC_Os05g47520
OsAffx.15136.1.S1_at--217--7451Chr05:27139811..27139835 (25 bp)
GTGTCGCTCTACCTCCGATGGAAAG
LOC_Os05g47520
OsAffx.15136.1.S1_at--59--10871Chr05:27139775..27139799 (25 bp)
TTGGATCTCCCATCAGTTGACAGTG
LOC_Os05g47520
OsAffx.15136.1.S1_at--118--8031Chr05:27139698..27139722 (25 bp)
GGAGGATCTTCCATACGACTACCAA
LOC_Os05g47520
OsAffx.15136.1.S1_at--475--2311Chr05:27139651..27139675 (25 bp)
AAAGGCACAGTTGGCTGGGTCGATC
LOC_Os05g47520
OsAffx.15136.1.S1_at--405--7691Chr05:27139548..27139572 (25 bp)
GGGTCAACTGGCCATTGTTCCTCAA
LOC_Os05g47520
OsAffx.15136.1.S1_at--1032--6991Chr05:27139514..27139538 (25 bp)
GTACTATTGCCGTGACATCGTCGTC
LOC_Os05g47520
OsAffx.15136.1.S1_at--1113--2091Chr05:27139500..27139524 (25 bp)
ACATCGTCGTCAGCCAGAGCAGGGA
LOC_Os05g47520
Target Sequence 
GTGACCGTGGCTTCGGAGACGACAACATTGCCATCCTGAGCTGCGGCAACGACGACTCCTCCTCCTCCTCCTACGCTGTG
GCCGTTCTTCAACCTTGGTATCATGTCGACTTCAGGCTTCACCTGTGTCGCTCTACCTCCGATGGAAAGCCGGGGAGTAG
TTGGATCTCCCATCAGTTGACAGTGGAGGAGCCACTGATGAGGAGAACGGTGTGCCCCGTCCCTGACTCGGCACTGAGGA
GGATCTTCCATACGACTACCAAGGTGATCACGCTCGGAGGTGCCAAAGGCACAGTTGGCTGGGTCGATCTCTGGCGAGGC
ATCCTTCTCTGCGACGTGCTCGAAGACAGCCCCAAGCTCCGCGACATGCCGCTGCCATTGCCCGCTAGGGTCAACTGGCC
ATTGTTCCTCAACCGCTGCCCGTACTATTGCCGTGACATCGTCGTCAGCCAGAGCAGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15136.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis