Browse Element(s) Details


Os.18743.1.S1_at

Description gb:AK070376.1
DB_XREF= gi:32980400
TID=Os.18743.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18743 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative serine proteinase (B1143G03.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050H13, full insert sequence.
FL= gb:AK070376.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5632011/11subtilase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56290OsAffx.23808.2.S1_x_at11/111+32751304..32754355expressed protein
LOC_Os01g56290Os.49991.1.S1_at11/111+32751304..32754355expressed protein
LOC_Os01g56290OsAffx.23808.2.S1_at8/111+32751304..32754355expressed protein
LOC_Os01g56300Os.20810.1.S1_at11/111+32759969..32766374expressed protein
LOC_Os01g56300Os.20810.1.S1_a_at11/111+32759969..32766374expressed protein
LOC_Os01g56300Os.20810.3.S1_x_at11/111+32759969..32766374expressed protein
LOC_Os01g56300OsAffx.28409.1.S1_at1/111+32759969..32766374expressed protein
LOC_Os01g56310Os.42028.1.S1_at11/111+32767019..32770164Lipoic acid synthetase, mitochondrial precursor, putative, expressed
LOC_Os01g56320Os.18743.1.S1_at11/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.18743.2.S1_x_at8/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.18743.2.S1_at5/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.14909.1.S1_at1/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56330Os.32267.1.S1_at11/111+32788726..32791901protein kinase family protein, putative, expressed
LOC_Os01g56340OsAffx.22940.5.S1_at3/111+32793340..32796110hypothetical protein
LOC_Os01g56340OsAffx.22940.5.S1_x_at1/111+32793340..32796110hypothetical protein
LOC_Os01g56350Os.26864.1.S1_at11/111+32797127..32803472expressed protein
LOC_Os01g56350Os.26864.2.S1_x_at11/111+32797127..32803472expressed protein
LOC_Os01g56360Os.22828.1.A1_at11/111+32801992..32805994condensation domain-containing protein, putative, expressed
LOC_Os01g56360Os.22828.1.A2_at11/111+32801992..32805994condensation domain-containing protein, putative, expressed
LOC_Os01g56360Os.45996.1.A1_x_at7/111+32801992..32805994condensation domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0048196cellular_componentextracellular matrix (sensu Magnoliophyta)
GO:0004289molecular_functionsubtilase activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18743.1.S1_at--209--5471Chr01:32782858..32782882 (25 bp)
GAACTGTAACCAACGTGGCGAGCGA
LOC_Os01g56320
Os.18743.1.S1_at--427--1871Chr01:32782882..32782906 (25 bp)
ACGAGCGCTACACGGTCAGTTACAG
LOC_Os01g56320
Os.18743.1.S1_at--104--6731Chr01:32782946..32782970 (25 bp)
GTTCTTCATCCCCAGCGGGCAGAGG
LOC_Os01g56320
Os.18743.1.S1_at--598--10571Chr01:32783037..32783061 (25 bp)
TTCTACGGCGACAAGGGCCACCGGG
LOC_Os01g56320
Os.18743.1.S1_at--780--7391Chr01:32783061..32783085 (25 bp)
GTGATGATCCCGTTCTCAGTTATCT
LOC_Os01g56320
Os.18743.1.S1_at--1024--3731Chr01:32783075..32783099 (25 bp)
CTCAGTTATCTCCAAGGTTGTGCAC
LOC_Os01g56320
Os.18743.1.S1_at--532--211Chr01:32783108..32783132 (25 bp)
ATTTGACTGATGGAAGAACGCTGTA
LOC_Os01g56320
Os.18743.1.S1_at--504--6431Chr01:32783220..32783244 (25 bp)
GATCTTGATGTACATTTTGATGCAT
LOC_Os01g56320
Os.18743.1.S1_at--387--7391Chr01:32783270..32783294 (25 bp)
GTGAGTGGCTAATATCTGTAACTGT
LOC_Os01g56320
Os.18743.1.S1_at--919--5911Chr01:32783298..32783322 (25 bp)
GAGAATGGTGTACCGGACTCCGTCC
LOC_Os01g56320
Os.18743.1.S1_at--1067--5711Chr01:32783313..32783337 (25 bp)
GACTCCGTCCTTTCACGAATGAGAA
LOC_Os01g56320
Target Sequence 
GAACTGTAACCAACGTGGCGAGCGACGAGCGCTACACGGTCAGTTACAGCGCCCCTTACGGGGTCNCCGTNTCNGCGTCG
CCGGCCCAGTTCTTCATCCCCAGCGGGCAGAGGCAGCAGGTGANCTTCGTCGTCAACGCCACCATGAACGGCACCTCCGC
GAGCTTCGGCAGCGTCGGCTTCTACGGCGACAAGGGCCACCGGGTGATGATCCCGTTCTCAGTTATCTCCAAGGTTGTGC
ACNGTTCATGATTTGACTGATGGAAGAACGCTGTAATATGGCAAAGGATNTGCCTGATCCGGCGTATGCAGCGGGGGTAA
CTTTGACTGCCTGGGGCTTAACCTGACCGGAGATTTTTTGTTGATCTTGATGTACATTTTGATGCATGTCGGTGTAAGTA
AGATCAAGATGAGTGAGTGGCTAATATCTGTAACTGTAAAGAGAATGGTGTACCGGACTCCGTCCTTTCACGAATGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18743.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis