Browse Element(s) Details


Os.20810.1.S1_at

Description gb:AK100439.1
DB_XREF= gi:32985648
TID=Os.20810.1
CNT=41
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20810 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1143G03.11 (B1143G03.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023089F03, full insert sequence.
FL= gb:AK065855.1 gb:AK072195.1 gb:AK100439.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5630011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56270Os.49365.1.S1_at11/111+32735130..32740445transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g56280Os.14919.1.S1_at1/111+32741923..32744159hypothetical protein
LOC_Os01g56290OsAffx.23808.2.S1_x_at11/111+32751304..32754355expressed protein
LOC_Os01g56290Os.49991.1.S1_at11/111+32751304..32754355expressed protein
LOC_Os01g56290OsAffx.23808.2.S1_at8/111+32751304..32754355expressed protein
LOC_Os01g56300Os.20810.1.S1_at11/111+32759969..32766374expressed protein
LOC_Os01g56300Os.20810.1.S1_a_at11/111+32759969..32766374expressed protein
LOC_Os01g56300Os.20810.3.S1_x_at11/111+32759969..32766374expressed protein
LOC_Os01g56300OsAffx.28409.1.S1_at1/111+32759969..32766374expressed protein
LOC_Os01g56310Os.42028.1.S1_at11/111+32767019..32770164Lipoic acid synthetase, mitochondrial precursor, putative, expressed
LOC_Os01g56320Os.18743.1.S1_at11/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.18743.2.S1_x_at8/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.18743.2.S1_at5/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.14909.1.S1_at1/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56330Os.32267.1.S1_at11/111+32788726..32791901protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20810.1.S1_at--583--1191Chr01:32765941..32765965 (25 bp)
AGTTTTTAACATTCATATTCCCCAG
LOC_Os01g56300
Os.20810.1.S1_at--460--231Chr01:32765955..32765979 (25 bp)
ATATTCCCCAGCGAAGAAGACGTCC
LOC_Os01g56300
Os.20810.1.S1_at--398--7051Chr01:32766069..32766093 (25 bp)
GTAAACACTAGTCTGGTCTTAATCT
LOC_Os01g56300
Os.20810.1.S1_at--502--7171Chr01:32766079..32766103 (25 bp)
GTCTGGTCTTAATCTATTTTAGTCA
LOC_Os01g56300
Os.20810.1.S1_at--677--1291Chr01:32766175..32766199 (25 bp)
AGATGCCTGTATTTCCAGGTGCCTA
LOC_Os01g56300
Os.20810.1.S1_at--510--3471Chr01:32766190..32766214 (25 bp)
CAGGTGCCTACTGACACTATATGGT
LOC_Os01g56300
Os.20810.1.S1_at--177--1211Chr01:32766261..32766285 (25 bp)
AGTTTGTTGTCATTTCATTTCTTCA
LOC_Os01g56300
Os.20810.1.S1_at--1158--6571Chr01:32766294..32766318 (25 bp)
GATTGGCACAAGATTTCGGCTTTTA
LOC_Os01g56300
Os.20810.1.S1_at--1068--3931Chr01:32766310..32766334 (25 bp)
CGGCTTTTAGCCTTGTGCGAACATA
LOC_Os01g56300
Os.20810.1.S1_at--884--6851Chr01:32766338..32766362 (25 bp)
GTTTGGTTTGTTCATTACTCTGCCT
LOC_Os01g56300
Os.20810.1.S1_at--561--3591Chr01:32766350..32766374 (25 bp)
CATTACTCTGCCTACATTTTGTTTA
LOC_Os01g56300
Target Sequence 
AGTTTTTAACATTCATATTCCCCAGCGAAGAAGACGTCCAAGATTAGTGGGCTTAGCAGCAGTGGTTGTACAGGTACTAG
GGCCTTCCTGTCTGTCGTTTTACTGGTGTGGAAGGTGCCTAGCGTCAAGTAAACACTAGTCTGGTCTTAATCTATTTTAG
TCAGGACCAAAGTGTGTTGGAATAATGAAGTTCTGTTTATTAGGTTTCTTGGAAGGATACTTAAAATGTCATGGAGATGC
CTGTATTTCCAGGTGCCTACTGACACTATATGGTGGGGTACTGGAAACTGGGGGTATATCTCTTAATTGTAAATCGTTAC
AGTTTGTTGTCATTTCATTTCTTCACTTGTTCAGATTGGCACAAGATTTCGGCTTTTAGCCTTGTGCGAACATAAATGTT
TGGTTTGTTCATTACTCTGCCTACATTTTGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20810.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis