Browse Element(s) Details


Os.49991.1.S1_at

Description gb:AK119498.1
DB_XREF= gi:37989121
TID=Os.49991.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49991 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-134-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-134-E04, full insert sequence.
FL= gb:AK119498.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5629011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56260Os.42032.1.S1_at10/111+32723284..32727004expressed protein
LOC_Os01g56270Os.49365.1.S1_at11/111+32735130..32740445transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g56280Os.14919.1.S1_at1/111+32741923..32744159hypothetical protein
LOC_Os01g56290OsAffx.23808.2.S1_x_at11/111+32751304..32754355expressed protein
LOC_Os01g56290Os.49991.1.S1_at11/111+32751304..32754355expressed protein
LOC_Os01g56290OsAffx.23808.2.S1_at8/111+32751304..32754355expressed protein
LOC_Os01g56300Os.20810.1.S1_at11/111+32759969..32766374expressed protein
LOC_Os01g56300Os.20810.1.S1_a_at11/111+32759969..32766374expressed protein
LOC_Os01g56300Os.20810.3.S1_x_at11/111+32759969..32766374expressed protein
LOC_Os01g56300OsAffx.28409.1.S1_at1/111+32759969..32766374expressed protein
LOC_Os01g56310Os.42028.1.S1_at11/111+32767019..32770164Lipoic acid synthetase, mitochondrial precursor, putative, expressed
LOC_Os01g56320Os.18743.1.S1_at11/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.18743.2.S1_x_at8/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.18743.2.S1_at5/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.14909.1.S1_at1/111+32777730..32783352subtilase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49991.1.S1_at--60--1751Chr01:32753772..32753796 (25 bp)
ACCGGACTTATTTGGTCTTCACGTG
LOC_Os01g56290
Os.49991.1.S1_at--164--711Chr01:32753810..32753834 (25 bp)
ATGAGTGTCTGATATGCCCTGGTAT
LOC_Os01g56290
Os.49991.1.S1_at--664--6871Chr01:32753844..32753868 (25 bp)
GTATTCTTATTTGGTCTTCACGTGA
LOC_Os01g56290
Os.49991.1.S1_at--811--1871Chr01:32753881..32753905 (25 bp)
ACGAGTGTCTGATATGCCCTGGTAT
LOC_Os01g56290
Os.49991.1.S1_at--536--6072Chr07:17998644..17998917 (25 bp)
GAGTATTCTTTCAAGTAGCCCCAAT
NONE
Os.49991.1.S1_at--593--9051Chr01:32753989..32754013 (25 bp)
TGCATGCATGGCGTACTGTTTTTTG
LOC_Os01g56290
Os.49991.1.S1_at--318--10471Chr01:32754038..32754062 (25 bp)
TTACTTCACACCTGTGGACCTGTGG
LOC_Os01g56290
Os.49991.1.S1_at--325--6631Chr01:32754070..32754094 (25 bp)
GTTGGGCGAGGTTTTCTGTGCAAAT
LOC_Os01g56290
Os.49991.1.S1_at--596--391Chr01:32754130..32754154 (25 bp)
ATCACCTTCGTACGTTCTCATTTTG
LOC_Os01g56290
Os.49991.1.S1_at--59--4151Chr01:32754210..32754234 (25 bp)
CGCTGGGCGTGTAACTTGTCATGTA
LOC_Os01g56290
Os.49991.1.S1_at--1155--10251Chr01:32754308..32754332 (25 bp)
TTTGAGTCTCAACAGCCCATATTAC
LOC_Os01g56290
Target Sequence 
ACCGGACTTATTTGGTCTTCACGTGAACTAACATTGCCATGAGTGTCTGATATGCCCTGGTATTATAGTCGAGTATTCTT
ATTTGGTCTTCACGTGAACTAAGATTGCCACGAGTGTCTGATATGCCCTGGTATTATAGGTGAGTATTCTTTCAAGTAGC
CCCAATCAAGTGAAACTTGGTTGTACCAAGATCAATGTGCTTGGTGAACCAAGAGCATGCATGCATGGCGTACTGTTTTT
TGAGAAGTGTACACTGACTCGGGGGTTTACTTCACACCTGTGGACCTGTGGTCGCTGGGTTGGGCGAGGTTTTCTGTGCA
AATGATTTTTGCAGGAAGGTGGTTCAAATTTTTGTGACATCACCTTCGTACGTTCTCATTTTGTTTCCGACTGTAGAGGT
AGATTTACCAAAGAATCAAGAGAAGTGTTTGCCCAGTGCGCTGGGCGTGTAACTTGTCATGTAACTCACAATTTATAGGC
TAAAAAAACTCCCAAGTTATGAAGGCAAGTGATTTTAACGGCAACATCTTTACAAATTTGAGTCTCAACAGCCCATATTA
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49991.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis