Browse Element(s) Details


Os.26864.2.S1_x_at

Description gb:NM_191407.1
DB_XREF= gi:34909897
GEN=P0665A11.9
TID=Os.26864.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26864 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0665A11.9 (P0665A11.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0665A11.9 (P0665A11.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5635011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56320Os.18743.1.S1_at11/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.18743.2.S1_x_at8/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.18743.2.S1_at5/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.14909.1.S1_at1/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56330Os.32267.1.S1_at11/111+32788726..32791901protein kinase family protein, putative, expressed
LOC_Os01g56340OsAffx.22940.5.S1_at3/111+32793340..32796110hypothetical protein
LOC_Os01g56340OsAffx.22940.5.S1_x_at1/111+32793340..32796110hypothetical protein
LOC_Os01g56350Os.26864.1.S1_at11/111+32797127..32803472expressed protein
LOC_Os01g56350Os.26864.2.S1_x_at11/111+32797127..32803472expressed protein
LOC_Os01g56360Os.22828.1.A1_at11/111+32801992..32805994condensation domain-containing protein, putative, expressed
LOC_Os01g56360Os.22828.1.A2_at11/111+32801992..32805994condensation domain-containing protein, putative, expressed
LOC_Os01g56360Os.45996.1.A1_x_at7/111+32801992..32805994condensation domain-containing protein, putative, expressed
LOC_Os01g56370Os.45996.1.A1_x_at11/111+32811584..32816819expressed protein
LOC_Os01g56370OsAffx.28228.1.S1_x_at1/111+32811584..32816819expressed protein
LOC_Os01g56380Os.35778.1.S1_at11/111+32827863..32829805Tyrosine/DOPA decarboxylase 2, putative, expressed
LOC_Os01g56380Os.47886.1.S1_at1/111+32827863..32829805Tyrosine/DOPA decarboxylase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26864.2.S1_x_at--5--8211Chr01:32799766..32799790 (25 bp)
GGAATTCCGTATCATGATGGGCACT
LOC_Os01g56350
Os.26864.2.S1_x_at--701--6251Chr01:32799781..32799805 (25 bp)
GATGGGCACTGATGTTCGCATACAA
LOC_Os01g56350
Os.26864.2.S1_x_at--340--4951Chr01:32799798..32799822 (25 bp)
GCATACAACGAGATCCTTTGGCAAT
LOC_Os01g56350
Os.26864.2.S1_x_at--1046--7471Chr01:32800399..32800423 (25 bp)
GTGGTGATCCTGTTTACCCAACCAT
LOC_Os01g56350
Os.26864.2.S1_x_at--1135--2011Chr01:32800426..32800450 (25 bp)
ACTACGTTCATGATCCTGACGAAGT
LOC_Os01g56350
Os.26864.2.S1_x_at--385--7711Chr01:32800463..32800487 (25 bp)
GGGTCCAGAATTTCATGAGCCTACA
LOC_Os01g56350
Os.26864.2.S1_x_at--230--5872Chr01:32800479..32800503 (25 bp)
GAGCCTACACCTGAAGTTGTACCTT
LOC_Os01g56350
Os.26864.2.S1_x_at--1148--6631Chr01:32800494..32800514 (21 bp)
GTTGTACCTTACTTGATGGAGCATG
LOC_Os01g56350
Os.26864.2.S1_x_at--143--5371Chr01:32800787..32800811 (25 bp)
GAAGAGCTATATGCCCGTTTAAATG
LOC_Os01g56350
Os.26864.2.S1_x_at--723--6031Chr01:32800959..32800983 (25 bp)
GAGATCCCATGGCTACTGCTGTTGA
LOC_Os01g56350
Os.26864.2.S1_x_at--480--2332Chr01:32810058..32810082 (25 bp)
AAAGTTGTTGCGCAGCCTGAGTCAC
NONE
Target Sequence 
GGAATTCCGTATCATGATGGGCACTGATGTTCGCATACAACGAGATCCTTTGGCAATGAGGATGCGGGAAGACCAGATCA
AACAGATTTGGGGTGGTGATCCTGTTTACCCAACCATTAACTACGTTCATGATCCTGACGAAGTAGCGGACTACAGGGGT
CCAGAATTTCATGAGCCTACACCTGAAGTTGTACCTTACTTGATGGAGCATGGTATAATGATAACAAAGGAAGAGCTATA
TGCCCGTTTAAATGAAGAGATGGAAGACATCAATCAGGACATTACGTATCTTCCTGAAGTCAGAGATCCCATGGCTACTG
CTGTTGATATTGGGGAGCATTCTTACAACGAAGATAGTGATGACGATGAGGAGGATGCTGACAAAGTTGTTGCGCAGCCT
GAGTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26864.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis