Browse Element(s) Details


Os.22828.1.A2_at

Description gb:AK120549.1
DB_XREF= gi:37990172
TID=Os.22828.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22828 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0665A11.10 (P0665A11.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013130A21, full insert sequence.
FL= gb:AK120549.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5636011/11condensation domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56320Os.18743.1.S1_at11/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.18743.2.S1_x_at8/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.18743.2.S1_at5/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.14909.1.S1_at1/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56330Os.32267.1.S1_at11/111+32788726..32791901protein kinase family protein, putative, expressed
LOC_Os01g56340OsAffx.22940.5.S1_at3/111+32793340..32796110hypothetical protein
LOC_Os01g56340OsAffx.22940.5.S1_x_at1/111+32793340..32796110hypothetical protein
LOC_Os01g56350Os.26864.1.S1_at11/111+32797127..32803472expressed protein
LOC_Os01g56350Os.26864.2.S1_x_at11/111+32797127..32803472expressed protein
LOC_Os01g56360Os.22828.1.A1_at11/111+32801992..32805994condensation domain-containing protein, putative, expressed
LOC_Os01g56360Os.22828.1.A2_at11/111+32801992..32805994condensation domain-containing protein, putative, expressed
LOC_Os01g56360Os.45996.1.A1_x_at7/111+32801992..32805994condensation domain-containing protein, putative, expressed
LOC_Os01g56370Os.45996.1.A1_x_at11/111+32811584..32816819expressed protein
LOC_Os01g56370OsAffx.28228.1.S1_x_at1/111+32811584..32816819expressed protein
LOC_Os01g56380Os.35778.1.S1_at11/111+32827863..32829805Tyrosine/DOPA decarboxylase 2, putative, expressed
LOC_Os01g56380Os.47886.1.S1_at1/111+32827863..32829805Tyrosine/DOPA decarboxylase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22828.1.A2_at--177--4971Chr01:32802274..32802298 (25 bp)
GCATCACACGAAGGCTTAAGGCACT
LOC_Os01g56360
Os.22828.1.A2_at--309--8251Chr01:32802255..32802279 (25 bp)
GGCACTATTTAATCATTGCACACAG
LOC_Os01g56360
Os.22828.1.A2_at--354--71Chr01:32802241..32802265 (25 bp)
ATTGCACACAGGCATGTATTCGTAA
LOC_Os01g56360
Os.22828.1.A2_at--703--7052Chr01:32802220..32802244 (25 bp)
GTAAGAATGATTGTACCATCCAAAT
LOC_Os01g56360
Os.22828.1.A2_at--518--2011Chr01:32802188..32802212 (25 bp)
ACTACTGGCAAGTGGTATCTATTTG
LOC_Os01g56360
Os.22828.1.A2_at--735--6911Chr01:32802164..32802188 (25 bp)
GTATGCACTGTAGCAACTAAACCTA
LOC_Os01g56360
Os.22828.1.A2_at--228--2371Chr01:32802120..32802144 (25 bp)
AAACCATCAGATGCTTTATGATCAG
LOC_Os01g56360
Os.22828.1.A2_at--43--3252Chr01:32811115..32811139 (25 bp)
CAAGCTCTGGCTTTTGGTTAAATAT
NONE
Os.22828.1.A2_at--716--7851Chr01:32802033..32802057 (25 bp)
GGTAGTCTGCTATGCTTTACTTTGC
LOC_Os01g56360
Os.22828.1.A2_at--597--10132Chr01:32811057..32811081 (25 bp)
TATGCTTTACTTTGCTTACCATGTG
NONE
Os.22828.1.A2_at--114--10471Chr01:32802008..32802032 (25 bp)
TTACCATGTGTAACGTGCAGCATAG
LOC_Os01g56360
Target Sequence 
GCATCACACGAAGGCTTAAGGCACTATTTAATCATTGCACACAGGCATGTATTCGTAAGAATGATTGTACCATCCAAATA
TCAAATACTACTGGCAAGTGGTATCTATTTGTATGCACTGTAGCAACTAAACCTAAAGTCAAATGACTAGATAAAAACCA
TCAGATGCTTTATGATCAGAAGTTTCCAGAGAACAAGCTCTGGCTTTTGGTTAAATATTCTCTGAAAAATTAAGAATAAA
TGGTAGTCTGCTATGCTTTACTTTGCTTACCATGTGTAACGTGCAGCATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22828.1.A2_at     

Putative homologies in rice

Putative homologies in arabidopsis