Browse Element(s) Details


Os.45996.1.A1_x_at

Description gb:NM_191409.1
DB_XREF= gi:34909901
GEN=P0665A11.11
TID=Os.45996.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45996 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0665A11.11 (P0665A11.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0665A11.11 (P0665A11.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5637011/11expressed protein
LOC_Os01g563607/11condensation domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56330Os.32267.1.S1_at11/111+32788726..32791901protein kinase family protein, putative, expressed
LOC_Os01g56340OsAffx.22940.5.S1_at3/111+32793340..32796110hypothetical protein
LOC_Os01g56340OsAffx.22940.5.S1_x_at1/111+32793340..32796110hypothetical protein
LOC_Os01g56350Os.26864.1.S1_at11/111+32797127..32803472expressed protein
LOC_Os01g56350Os.26864.2.S1_x_at11/111+32797127..32803472expressed protein
LOC_Os01g56360Os.22828.1.A1_at11/111+32801992..32805994condensation domain-containing protein, putative, expressed
LOC_Os01g56360Os.22828.1.A2_at11/111+32801992..32805994condensation domain-containing protein, putative, expressed
LOC_Os01g56360Os.45996.1.A1_x_at7/111+32801992..32805994condensation domain-containing protein, putative, expressed
LOC_Os01g56370Os.45996.1.A1_x_at11/111+32811584..32816819expressed protein
LOC_Os01g56370OsAffx.28228.1.S1_x_at1/111+32811584..32816819expressed protein
LOC_Os01g56380Os.35778.1.S1_at11/111+32827863..32829805Tyrosine/DOPA decarboxylase 2, putative, expressed
LOC_Os01g56380Os.47886.1.S1_at1/111+32827863..32829805Tyrosine/DOPA decarboxylase 2, putative, expressed
LOC_Os01g56390Os.13915.1.S1_at11/111+32835247..32838750F-box domain containing protein, expressed
LOC_Os01g56400Os.2175.1.S1_a_at11/111+32840542..32843876ABC transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45996.1.A1_x_at--754--1431Chr01:32813190..32813214 (25 bp)
AGAACGATCCTCCTTGTCAATTTGA
LOC_Os01g56370
Os.45996.1.A1_x_at--870--2591Chr01:32812955..32812979 (25 bp)
AACGCACTTGGTTTCATAATCCTCC
LOC_Os01g56370
Os.45996.1.A1_x_at--675--9311Chr01:32812933..32812957 (25 bp)
TCCCGTTCTTCATAGGCATGCACAA
LOC_Os01g56370
Os.45996.1.A1_x_at--369--2891Chr01:32812910..32812934 (25 bp)
AAGGATCCACTAGACTACGTTCGTA
LOC_Os01g56370
Os.45996.1.A1_x_at--221--7512Chr01:32812844..32812868 (25 bp)
GTGGTATTCACTCATTTAGCTGCAG
LOC_Os01g56370
Os.45996.1.A1_x_at--207--1612Chr01:32812387..32812411 (25 bp)
AGCTGCTATCTTCCATCGTATGATC
LOC_Os01g56370
Os.45996.1.A1_x_at--524--332Chr01:32812358..32812382 (25 bp)
ATACTACCATATCATTCTCCAACAT
LOC_Os01g56370
Os.45996.1.A1_x_at--185--2092Chr01:32812337..32812361 (25 bp)
ACATGATCGGCCCAGTTGAACAGGT
LOC_Os01g56370
Os.45996.1.A1_x_at--127--10412Chr01:32812308..32812332 (25 bp)
TTTTGTGGGCATCCAGTTGTCTTCA
LOC_Os01g56370
Os.45996.1.A1_x_at--649--6252Chr01:32811689..32811713 (25 bp)
GATGGTAAATCTTGCCGTGGACGAG
LOC_Os01g56370
Os.45996.1.A1_x_at--1063--172Chr01:32811630..32811654 (25 bp)
ATTTTTCCGAATCCCTCAGGCAGAT
LOC_Os01g56370
Target Sequence 
AGAACGATCCTCCTTGTCAATTTGAGGCCAACCACAAGCCTGCATGCATACGTAGATATGATCAATTCTGGCAGAGAGGA
TGAAGTGAAATGGGGAAACGCACTTGGTTTCATAATCCTCCCGTTCTTCATAGGCATGCACAAGGATCCACTAGACTACG
TTCGTAAAGCCAAGAAGGTTGTTGATAGGAAGAAGAGCTCGTTAGAAGTGGTATTCACTCATTTAGCTGCAGAAGTGATC
CTCAAACTTTTTGGGCTCAAGGCAGCAGCTGCTATCTTCCATCGTATGATCTCTCATACTACCATATCATTCTCCAACAT
GATCGGCCCAGTTGAACAGGTGGAGTTTTGTGGGCATCCAGTTGTCTTCATTGCCCCTAGCGGCTATGGACCTCCAGAAG
CCTTAACCGTGAATTTTCAAAGTTACGTTAACACCATGATGGTAAATCTTGCCGTGGACGAGGCACAATTTCCAGATTGT
CATGAGCTTTTGGATGATTTTTCCGAATCCCTCAGGCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45996.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis