Browse Element(s) Details


Os.2175.1.S1_a_at

Description gb:AK099603.1
DB_XREF= gi:32984812
TID=Os.2175.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.2175 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ABC-type transport protein (P0665A11.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013047J06, full insert sequence.
FL= gb:AK099603.1 gb:AK071653.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5640011/11ABC transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56370Os.45996.1.A1_x_at11/111+32811584..32816819expressed protein
LOC_Os01g56370OsAffx.28228.1.S1_x_at1/111+32811584..32816819expressed protein
LOC_Os01g56380Os.35778.1.S1_at11/111+32827863..32829805Tyrosine/DOPA decarboxylase 2, putative, expressed
LOC_Os01g56380Os.47886.1.S1_at1/111+32827863..32829805Tyrosine/DOPA decarboxylase 2, putative, expressed
LOC_Os01g56390Os.13915.1.S1_at11/111+32835247..32838750F-box domain containing protein, expressed
LOC_Os01g56400Os.2175.1.S1_a_at11/111+32840542..32843876ABC transporter family protein, expressed
LOC_Os01g56410OsAffx.25367.1.S1_at1/111+32844555..32848855retrotransposon, putative, centromere-specific
LOC_Os01g56420Os.42024.1.S1_at11/111+32850176..32851015Ctr copper transporter family protein, expressed
LOC_Os01g56430Os.30148.1.S1_at11/111+32853138..32853771Ctr copper transporter family protein, expressed
LOC_Os01g56440OsAffx.11622.1.S1_at7/111+32854639..32854869NA
LOC_Os01g56450Os.26282.1.S1_at11/111+32861705..32862760expressed protein
LOC_Os01g56460Os.23696.1.S1_at10/111+32865755..32868465Mitochondrial glycoprotein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008361biological_processregulation of cell size
GO:0009637biological_processresponse to blue light
GO:0009639biological_processresponse to red or far red light
GO:0009640biological_processphotomorphogenesis
GO:0009733biological_processresponse to auxin stimulus
GO:0009926biological_processauxin polar transport
GO:0009958biological_processpositive gravitropism
GO:0043481biological_processanthocyanin accumulation in tissues in response to UV light
GO:0005886cellular_componentplasma membrane
GO:0005215molecular_functiontransporter activity
GO:0005516molecular_functioncalmodulin binding
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2175.1.S1_a_at--324--8811Chr01:32841802..32841826 (25 bp)
TGTTGCATTTGGTCTTGGTAAGCTC
LOC_Os01g56400
Os.2175.1.S1_a_at--393--7831Chr01:32841786..32841810 (25 bp)
GGTAAGCTCAACCTTTCGTTGGATG
LOC_Os01g56400
Os.2175.1.S1_a_at--246--591Chr01:32841618..32841642 (25 bp)
ATCCAAACTCTGAGTGGCGGGCAGA
LOC_Os01g56400
Os.2175.1.S1_a_at--266--9011Chr01:32841583..32841607 (25 bp)
TGCAATTGCCGGTGCTTTAGCTGAA
LOC_Os01g56400
Os.2175.1.S1_a_at--978--4751Chr01:32841564..32841588 (25 bp)
GCTGAAGCATCCAAAGTACTACTAC
LOC_Os01g56400
Os.2175.1.S1_a_at--650--7991Chr01:32841538..32841562 (25 bp)
GGATGAGCTGACCACATTCTTGGAT
LOC_Os01g56400
Os.2175.1.S1_a_at--422--7871Chr01:32840847..32840871 (25 bp)
GGTTTCAGCATTGTGGGTGACCCAT
LOC_Os01g56400
Os.2175.1.S1_a_at--66--631Chr01:32840803..32840827 (25 bp)
ATGCTGATGGTGCTATTTATATGGA
LOC_Os01g56400
Os.2175.1.S1_a_at--386--6231Chr01:32840777..32840801 (25 bp)
GATGGCCAGACAATTATTCAAGGTG
LOC_Os01g56400
Os.2175.1.S1_a_at--67--7771Chr01:32840756..32840780 (25 bp)
GGTGATGTGTCTACAATATCCAAAT
LOC_Os01g56400
Os.2175.1.S1_a_at--930--4011Chr01:32840711..32840735 (25 bp)
CGCTACTTCGGTCACTTTGAGCTTT
LOC_Os01g56400
Target Sequence 
TGTTGCATTTGGTCTTGGTAAGCTCAACCTTTCGTTGGATGAGGTTAGGTCAAGAGTATCACAATCACTGGATGCTGTGG
GAATGTTAAGCTACTCTCAAAGGCCAATCCAAACTCTGAGTGGCGGGCAGAAGCAGAGAGTTGCAATTGCCGGTGCTTTA
GCTGAAGCATCCAAAGTACTACTACTGGATGAGCTGACCACATTCTTGGATGAATACGACCAGATGGGTGTTATCAAGGC
GGTAAGGAAATCTGTAGGTGCTGGTGGGGAGGTTTCAGCATTGTGGGTGACCCATCGACTGGAAGAACTCAGATATGCTG
ATGGTGCTATTTATATGGAAGATGGCCAGACAATTATTCAAGGTGATGTGTCTACAATATCCAAATATATAAAGAAAAAG
CAAGCCCGCTACTTCGGTCACTTTGAGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2175.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis