Browse Element(s) Details


Os.42024.1.S1_at

Description gb:CB661145
DB_XREF= gi:29664870
DB_XREF=OSJNEd03J24.f
CLONE=OSJNEd03J24
TID=Os.42024.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42024 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0665A11.18 (P0665A11.18), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5642011/11Ctr copper transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56380Os.35778.1.S1_at11/111+32827863..32829805Tyrosine/DOPA decarboxylase 2, putative, expressed
LOC_Os01g56380Os.47886.1.S1_at1/111+32827863..32829805Tyrosine/DOPA decarboxylase 2, putative, expressed
LOC_Os01g56390Os.13915.1.S1_at11/111+32835247..32838750F-box domain containing protein, expressed
LOC_Os01g56400Os.2175.1.S1_a_at11/111+32840542..32843876ABC transporter family protein, expressed
LOC_Os01g56410OsAffx.25367.1.S1_at1/111+32844555..32848855retrotransposon, putative, centromere-specific
LOC_Os01g56420Os.42024.1.S1_at11/111+32850176..32851015Ctr copper transporter family protein, expressed
LOC_Os01g56430Os.30148.1.S1_at11/111+32853138..32853771Ctr copper transporter family protein, expressed
LOC_Os01g56440OsAffx.11622.1.S1_at7/111+32854639..32854869NA
LOC_Os01g56450Os.26282.1.S1_at11/111+32861705..32862760expressed protein
LOC_Os01g56460Os.23696.1.S1_at10/111+32865755..32868465Mitochondrial glycoprotein, expressed
LOC_Os01g56470Os.32071.1.S1_at11/111+32870152..32872039Mal d 1-associated protein, putative, expressed
LOC_Os01g56470Os.32071.2.S1_x_at10/111+32870152..32872039Mal d 1-associated protein, putative, expressed
LOC_Os01g56480Os.51237.1.S1_at11/111+32873958..32874554expressed protein
LOC_Os01g56480Os.51237.1.S1_x_at11/111+32873958..32874554expressed protein
LOC_Os01g56480OsAffx.9410.1.S1_x_at4/111+32873958..32874554expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0015678biological_processhigh affinity copper ion transport
GO:0048234biological_processmale gamete generation (sensu Magnoliophyta)
GO:0048364biological_processroot development
GO:0016020cellular_componentmembrane
GO:0005375molecular_functioncopper ion transporter activity
GO:0015089molecular_functionhigh affinity copper ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42024.1.S1_at--542--9411Chr01:32850704..32850728 (25 bp)
TCGTCGACGTTGGTGTGTACTGTGA
LOC_Os01g56420
Os.42024.1.S1_at--563--4051Chr01:32850730..32850754 (25 bp)
CGATCGATTCGGTTCGGTGGACGTT
LOC_Os01g56420
Os.42024.1.S1_at--554--7511Chr01:32850746..32850770 (25 bp)
GTGGACGTTGGTTTGATGCTTGCAT
LOC_Os01g56420
Os.42024.1.S1_at--519--3171Chr01:32850781..32850805 (25 bp)
AATTGTGTATATTGTTCGCGGTCGG
LOC_Os01g56420
Os.42024.1.S1_at--976--7871Chr01:32850825..32850849 (25 bp)
GGTTTTCTTTCGTCTGTATCATTGT
LOC_Os01g56420
Os.42024.1.S1_at--677--2411Chr01:32850871..32850895 (25 bp)
AAAAAGGCTCCTGATGGTCCATCTC
LOC_Os01g56420
Os.42024.1.S1_at--1137--6231Chr01:32850883..32850907 (25 bp)
GATGGTCCATCTCTCAAGTTGAAAT
LOC_Os01g56420
Os.42024.1.S1_at--193--471Chr01:32850906..32850930 (25 bp)
ATCTGAAAAGTTCCGGTGCCGTGAA
LOC_Os01g56420
Os.42024.1.S1_at--369--5551Chr01:32850928..32850952 (25 bp)
GAAACTGTAATCGTGCAATCCGCTA
LOC_Os01g56420
Os.42024.1.S1_at--148--3051Chr01:32850944..32850968 (25 bp)
AATCCGCTATCTATCACTTGTTTCA
LOC_Os01g56420
Os.42024.1.S1_at--705--6831Chr01:32850963..32850987 (25 bp)
GTTTCATTGATGATTCACCCTGGCT
LOC_Os01g56420
Target Sequence 
TCGTCGACGTTGGTGTGTACTGTGAGCGATCGATTCGGTTCGGTGGACGTTGGTTTGATGCTTGCATGTGTTTGTGTAAT
TGTGTATATTGTTCGCGGTCGGTTGGATGAGTTGTTTGGCTGGTTTTCTTTCGTCTGTATCATTGTATGGCTCAAAAACG
TGACATGAAAAAGGCTCCTGATGGTCCATCTCTCAAGTTGAAATCTGAAAAGTTCCGGTGCCGTGAAACTGTAATCGTGC
AATCCGCTATCTATCACTTGTTTCATTGATGATTCACCCTGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42024.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis