Browse Element(s) Details


Os.26282.1.S1_at

Description gb:AK069298.1
DB_XREF= gi:32979322
TID=Os.26282.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26282 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0665A11.21 (P0665A11.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023015J20, full insert sequence.
FL= gb:AK069298.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5645011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56390Os.13915.1.S1_at11/111+32835247..32838750F-box domain containing protein, expressed
LOC_Os01g56400Os.2175.1.S1_a_at11/111+32840542..32843876ABC transporter family protein, expressed
LOC_Os01g56410OsAffx.25367.1.S1_at1/111+32844555..32848855retrotransposon, putative, centromere-specific
LOC_Os01g56420Os.42024.1.S1_at11/111+32850176..32851015Ctr copper transporter family protein, expressed
LOC_Os01g56430Os.30148.1.S1_at11/111+32853138..32853771Ctr copper transporter family protein, expressed
LOC_Os01g56440OsAffx.11622.1.S1_at7/111+32854639..32854869NA
LOC_Os01g56450Os.26282.1.S1_at11/111+32861705..32862760expressed protein
LOC_Os01g56460Os.23696.1.S1_at10/111+32865755..32868465Mitochondrial glycoprotein, expressed
LOC_Os01g56470Os.32071.1.S1_at11/111+32870152..32872039Mal d 1-associated protein, putative, expressed
LOC_Os01g56470Os.32071.2.S1_x_at10/111+32870152..32872039Mal d 1-associated protein, putative, expressed
LOC_Os01g56480Os.51237.1.S1_at11/111+32873958..32874554expressed protein
LOC_Os01g56480Os.51237.1.S1_x_at11/111+32873958..32874554expressed protein
LOC_Os01g56480OsAffx.9410.1.S1_x_at4/111+32873958..32874554expressed protein
LOC_Os01g56490Os.2185.1.S1_at11/111+32879763..32896419Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g56490Os.9363.2.S1_x_at1/111+32879763..32896419Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26282.1.S1_at--235--1331Chr01:32862015..32862039 (25 bp)
AGAGGAAACCAACCGCGCCATGATT
LOC_Os01g56450
Os.26282.1.S1_at--445--7751Chr01:32861989..32862013 (25 bp)
GGTGATGGAACGAACCGTGCGCTTC
LOC_Os01g56450
Os.26282.1.S1_at--841--2591Chr01:32861977..32862001 (25 bp)
AACCGTGCGCTTCTTGGTCTTTTTG
LOC_Os01g56450
Os.26282.1.S1_at--401--7151Chr01:32861961..32861985 (25 bp)
GTCTTTTTGTGTATAGCGCTGCGTT
LOC_Os01g56450
Os.26282.1.S1_at--697--1651Chr01:32861947..32861971 (25 bp)
AGCGCTGCGTTCTTGCTGATCGCAA
LOC_Os01g56450
Os.26282.1.S1_at--259--4751Chr01:32861933..32861957 (25 bp)
GCTGATCGCAATTTTCCTCTTTTGT
LOC_Os01g56450
Os.26282.1.S1_at--1144--7431Chr01:32861889..32861913 (25 bp)
GTGTACGCCTTTGCTCCGGAGAAAA
LOC_Os01g56450
Os.26282.1.S1_at--386--311Chr01:32861852..32861876 (25 bp)
ATACGTGTTATGCAACTTATTTCGA
LOC_Os01g56450
Os.26282.1.S1_at--623--791Chr01:32861783..32861807 (25 bp)
ATGTGTGGATTCTTGAAGCCTTTTT
LOC_Os01g56450
Os.26282.1.S1_at--37--10371Chr01:32861755..32861779 (25 bp)
TTTTTTGGAGTAATCACCGGAGGAG
LOC_Os01g56450
Os.26282.1.S1_at--178--6571Chr01:32861727..32861751 (25 bp)
GATTCTCCACCTAAATTTTCCATTG
LOC_Os01g56450
Target Sequence 
AGAGGAAACCAACCGCGCCATGATTTGGTGATGGAACGAACCGTGCGCTTCTTGGTCTTTTTGTGTATAGCGCTGCGTTC
TTGCTGATCGCAATTTTCCTCTTTTGTTTTGTTTGTGCGTGTTGGTGTGTACGCCTTTGCTCCGGAGAAAACGGCAANGT
GCAATACGTGTTATGCAACTTATTTCGAAGTTTTTAGTTTGTATNCATAGCAATCGCCAGAATGGCAGATGAATGTGTGG
ATTCTTGAAGCCTTTTTTTTTTTTTTGGAGTAATCACCGGAGGAGAGAGATTCTCCACCTAAATTTTCCATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26282.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis