Browse Element(s) Details


Os.2185.1.S1_at

Description gb:BI808038
DB_XREF= gi:15855226
DB_XREF=B009D10
CLONE=B009D10
TID=Os.2185.1
CNT=13
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.2185 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ubiquitin carboxyl-terminal hydrolase (P0665A11.26), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5649011/11Ubiquitin carboxyl-terminal hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56440OsAffx.11622.1.S1_at7/111+32854639..32854869NA
LOC_Os01g56450Os.26282.1.S1_at11/111+32861705..32862760expressed protein
LOC_Os01g56460Os.23696.1.S1_at10/111+32865755..32868465Mitochondrial glycoprotein, expressed
LOC_Os01g56470Os.32071.1.S1_at11/111+32870152..32872039Mal d 1-associated protein, putative, expressed
LOC_Os01g56470Os.32071.2.S1_x_at10/111+32870152..32872039Mal d 1-associated protein, putative, expressed
LOC_Os01g56480Os.51237.1.S1_at11/111+32873958..32874554expressed protein
LOC_Os01g56480Os.51237.1.S1_x_at11/111+32873958..32874554expressed protein
LOC_Os01g56480OsAffx.9410.1.S1_x_at4/111+32873958..32874554expressed protein
LOC_Os01g56490Os.2185.1.S1_at11/111+32879763..32896419Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g56490Os.9363.2.S1_x_at1/111+32879763..32896419Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g56500OsAffx.23809.3.S1_at11/111+32900735..32902741expressed protein
LOC_Os01g56500OsAffx.23809.1.S1_x_at11/111+32900735..32902741expressed protein
LOC_Os01g56500OsAffx.23809.2.S1_x_at2/111+32900735..32902741expressed protein
LOC_Os01g56510Os.35685.1.S1_at11/111+32907558..32912991Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os01g56520Os.18007.1.S1_s_at11/111+32913773..32918799Double-stranded RNA binding motif family protein, expressed
LOC_Os01g56520Os.18007.1.S1_at11/111+32913773..32918799Double-stranded RNA binding motif family protein, expressed
LOC_Os01g56530OsAffx.11623.1.S1_s_at11/111+32919844..32920762expressed protein
LOC_Os01g56530OsAffx.11623.1.S1_at9/111+32919844..32920762expressed protein
LOC_Os01g56540OsAffx.11623.1.S1_at2/111+32921208..32924113Pre-SET motif family protein, expressed
LOC_Os01g56540Os.54138.1.S1_at1/111+32921208..32924113Pre-SET motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2185.1.S1_at--1001--3011Chr01:32880344..32880368 (25 bp)
AATGCCTAGGACTTGAGCACTCAGA
LOC_Os01g56490
Os.2185.1.S1_at--751--631Chr01:32880226..32880325 (25 bp)
ATGCTTGTCCAATCAGAACCGCAAT
LOC_Os01g56490
Os.2185.1.S1_at--207--5451Chr01:32880211..32880235 (25 bp)
GAACCGCAATTCTTTCGATAAGGCT
LOC_Os01g56490
Os.2185.1.S1_at--185--8691Chr01:32880145..32880169 (25 bp)
TGTGATGTATCCAGAGCTCTCACCT
LOC_Os01g56490
Os.2185.1.S1_at--156--9531Chr01:32880128..32880152 (25 bp)
TCTCACCTGCCGTAGTACAAGCTAA
LOC_Os01g56490
Os.2185.1.S1_at--937--8231Chr01:32880066..32880090 (25 bp)
GGCAAAGTTCATTGTCTTCTTCTAG
LOC_Os01g56490
Os.2185.1.S1_at--45--1171Chr01:32880035..32880059 (25 bp)
AGTCATTATTTTGGTCTGCGCAAGA
LOC_Os01g56490
Os.2185.1.S1_at--767--3231Chr01:32880015..32880039 (25 bp)
CAAGAAGGCGTTGCACAGTCTGGTG
LOC_Os01g56490
Os.2185.1.S1_at--398--3131Chr01:32879975..32879999 (25 bp)
AATTTTCCATCTGGTTGGGTGTACA
LOC_Os01g56490
Os.2185.1.S1_at--361--10192Chr05:17240811..17240961 (24 bp)
TATATTGGGCATGGGCTGATCATCC
NONE
Os.2185.1.S1_at--196--4751Chr01:32879883..32879907 (25 bp)
GCTGATCATCCCAGTGGTTTTTGTT
LOC_Os01g56490
Target Sequence 
AATGCCTAGGACTTGAGCACTCAGACGTCACCCCAAAAAGGTCATGCTTGTCCAATCAGAACCGCAATTCTTTCGATAAG
GCTGTGAAGATTTTCAACTAGAGGTGGTTAAATTATCACATTTATGTGATGTATCCAGAGCTCTCACCTGCCGTAGTACA
AGCTAATGAGATCATCAAGAGCACCTTAATTTATTCCTCACCCNGGCAAAGTTCATTGTCTTCTTCTAGACATNNATAGT
CATTATTTTGGTCTGCGCAAGAAGGCGTTGCACAGTCTGGTGTGGTCGGTTGAAAGAAATTTTCCATCTGGTTGGGTGTA
CAGGGTTCTTTAATGTTGGAATTCTTAGTTGTTTTTAGGTAGATTCTGAAAGCTGTATATTGGGCATGGGCTGATCATCC
CAGTGGTTTTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2185.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis