Browse Element(s) Details


Os.18007.1.S1_s_at

Description gb:AK069455.1
DB_XREF= gi:32979479
TID=Os.18007.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18007 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023019D24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019D24, full insert sequence.
FL= gb:AK069455.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5652011/11Double-stranded RNA binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56490Os.2185.1.S1_at11/111+32879763..32896419Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g56490Os.9363.2.S1_x_at1/111+32879763..32896419Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g56500OsAffx.23809.3.S1_at11/111+32900735..32902741expressed protein
LOC_Os01g56500OsAffx.23809.1.S1_x_at11/111+32900735..32902741expressed protein
LOC_Os01g56500OsAffx.23809.2.S1_x_at2/111+32900735..32902741expressed protein
LOC_Os01g56510Os.35685.1.S1_at11/111+32907558..32912991Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os01g56520Os.18007.1.S1_s_at11/111+32913773..32918799Double-stranded RNA binding motif family protein, expressed
LOC_Os01g56520Os.18007.1.S1_at11/111+32913773..32918799Double-stranded RNA binding motif family protein, expressed
LOC_Os01g56530OsAffx.11623.1.S1_s_at11/111+32919844..32920762expressed protein
LOC_Os01g56530OsAffx.11623.1.S1_at9/111+32919844..32920762expressed protein
LOC_Os01g56540OsAffx.11623.1.S1_at2/111+32921208..32924113Pre-SET motif family protein, expressed
LOC_Os01g56540Os.54138.1.S1_at1/111+32921208..32924113Pre-SET motif family protein, expressed
LOC_Os01g56550Os.10968.1.S1_at11/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56550Os.32625.1.S1_s_at11/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56550Os.32625.2.S1_x_at10/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56560Os.45897.1.S1_at11/111+32935529..32937893aromatic-rich family protein, putative, expressed
LOC_Os01g56560Os.45897.1.S1_s_at11/111+32935529..32937893aromatic-rich family protein, putative, expressed
LOC_Os01g56560OsAffx.23810.1.S1_at10/111+32935529..32937893aromatic-rich family protein, putative, expressed
LOC_Os01g56570Os.29865.1.S1_at10/111+32938264..32939986Core-2/I-Branching enzyme family protein, expressed
LOC_Os01g56580Os.11591.1.S1_x_at11/111+32942542..32949739protein kinase family protein, putative, expressed
LOC_Os01g56580Os.11591.2.S1_at10/111+32942542..32949739protein kinase family protein, putative, expressed
LOC_Os01g56580Os.52563.1.S1_at1/111+32942542..32949739protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003725molecular_functiondouble-stranded RNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18007.1.S1_s_at--413--6971Chr01:32914424..32914448 (25 bp)
GTAGCCTCAACCAGTACTGTCAGTT
LOC_Os01g56520
Os.18007.1.S1_s_at--312--10071Chr01:32914398..32914422 (25 bp)
TAGTGGATGCGGCTCTGACCCCTTA
LOC_Os01g56520
Os.18007.1.S1_s_at--667--10451Chr01:32914376..32914400 (25 bp)
TTAGCCTCAGCCAGTACTGTCAATT
LOC_Os01g56520
Os.18007.1.S1_s_at--1040--8731Chr01:32914359..32914383 (25 bp)
TGTCAATTCTACTGGATGCGGCTCT
LOC_Os01g56520
Os.18007.1.S1_s_at--668--10451Chr01:32914328..32914352 (25 bp)
TTAGCCTCAGCCAGTACTGTCAGTT
LOC_Os01g56520
Os.18007.1.S1_s_at--1069--8311Chr01:32914292..32914316 (25 bp)
GGCTGCTCCTTGTTAACTAACCGAG
LOC_Os01g56520
Os.18007.1.S1_s_at--610--2531Chr01:32914278..32914302 (25 bp)
AACTAACCGAGTCCAGGTCTATCCA
LOC_Os01g56520
Os.18007.1.S1_s_at--1023--3991Chr01:32914250..32914274 (25 bp)
CGTCCTGACCTGGTATTGCCGGAGG
LOC_Os01g56520
Os.18007.1.S1_s_at--560--6731Chr01:32914217..32914241 (25 bp)
GTTCTTCCTTTCAGTGACGATGTTT
LOC_Os01g56520
Os.18007.1.S1_s_at--839--731Chr01:32914198..32914222 (25 bp)
ATGTTTGGGTGGCAGTCAGCCTACC
LOC_Os01g56520
Os.18007.1.S1_s_at--294--2811Chr01:32914002..32914026 (25 bp)
AAGTTGTAGCTTCTGCCAAGTTTAA
LOC_Os01g56520
Target Sequence 
GTAGCCTCAACCAGTACTGTCAGTTNTAGTGGATGCGGCTCTGACCCCTTAGCCTCAGCCAGTACTGTCAATTCTACTGG
ATGCGGCTCTGTCCCCTTAGCCTCAGCCAGTACTGTCAGTTNTACTGGATGCGGCTGCTCCTTGTTAACTAACCGAGTCC
AGGTCTATCCACGCCGTCCTGACCTGGTATTGCCGGAGGGCGCGACCGTTCTTCCTTTCAGTGACGATGTTTGGGTGGCA
GTCAGCCTACCTACTCTCAACCATTAAGGCAGAAGAAAACTACGCCTTAGGAACGTTGCGGNAGACAAGAACTGGAGCCG
GTGCNTTTGTGAAGTTGTAGCTTCTGCCAAGTTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18007.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis