Browse Element(s) Details


Os.45897.1.S1_s_at

Description gb:NM_191432.1
DB_XREF= gi:34909947
GEN=P0695H10.10
TID=Os.45897.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45897 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0695H10.10 (P0695H10.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0695H10.10 (P0695H10.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5656011/11aromatic-rich family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56510Os.35685.1.S1_at11/111+32907558..32912991Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os01g56520Os.18007.1.S1_s_at11/111+32913773..32918799Double-stranded RNA binding motif family protein, expressed
LOC_Os01g56520Os.18007.1.S1_at11/111+32913773..32918799Double-stranded RNA binding motif family protein, expressed
LOC_Os01g56530OsAffx.11623.1.S1_s_at11/111+32919844..32920762expressed protein
LOC_Os01g56530OsAffx.11623.1.S1_at9/111+32919844..32920762expressed protein
LOC_Os01g56540OsAffx.11623.1.S1_at2/111+32921208..32924113Pre-SET motif family protein, expressed
LOC_Os01g56540Os.54138.1.S1_at1/111+32921208..32924113Pre-SET motif family protein, expressed
LOC_Os01g56550Os.10968.1.S1_at11/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56550Os.32625.1.S1_s_at11/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56550Os.32625.2.S1_x_at10/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56560Os.45897.1.S1_at11/111+32935529..32937893aromatic-rich family protein, putative, expressed
LOC_Os01g56560Os.45897.1.S1_s_at11/111+32935529..32937893aromatic-rich family protein, putative, expressed
LOC_Os01g56560OsAffx.23810.1.S1_at10/111+32935529..32937893aromatic-rich family protein, putative, expressed
LOC_Os01g56570Os.29865.1.S1_at10/111+32938264..32939986Core-2/I-Branching enzyme family protein, expressed
LOC_Os01g56580Os.11591.1.S1_x_at11/111+32942542..32949739protein kinase family protein, putative, expressed
LOC_Os01g56580Os.11591.2.S1_at10/111+32942542..32949739protein kinase family protein, putative, expressed
LOC_Os01g56580Os.52563.1.S1_at1/111+32942542..32949739protein kinase family protein, putative, expressed
LOC_Os01g56590Os.23676.1.S1_at11/111+32951018..32973887HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45897.1.S1_s_at--178--7011Chr01:32935958..32935982 (25 bp)
GTACTCGCCGGAGCAGATGTTCGCT
LOC_Os01g56560
Os.45897.1.S1_s_at--981--5031Chr01:32935970..32935994 (25 bp)
GCAGATGTTCGCTGTTGTCGCGGCA
LOC_Os01g56560
Os.45897.1.S1_s_at--275--8711Chr01:32935985..32936009 (25 bp)
TGTCGCGGCAGTAGACCTCTATGAG
LOC_Os01g56560
Os.45897.1.S1_s_at--428--10251Chr01:32936013..32936037 (25 bp)
TTTGTGCCGTGGTGTCAGAGGTCTA
LOC_Os01g56560
Os.45897.1.S1_s_at--80--8331Chr01:32936061..32936085 (25 bp)
GGCTCGTTTGATGCTGAACTCGAAA
LOC_Os01g56560
Os.45897.1.S1_s_at--297--9711Chr01:32936092..32936116 (25 bp)
TCAAGTTCCTTGTCGAGAGTTATGT
LOC_Os01g56560
Os.45897.1.S1_s_at--584--4091Chr01:32937553..32937577 (25 bp)
CGACAGCATCTGAAAGTGGACTTTT
LOC_Os01g56560
Os.45897.1.S1_s_at--821--6851Chr01:32937594..32937618 (25 bp)
GTTTGGGAGTTCAAGCCTGGTCCTG
LOC_Os01g56560
Os.45897.1.S1_s_at--567--2651Chr01:32937606..32937630 (25 bp)
AAGCCTGGTCCTGTTCCTGGAACAT
LOC_Os01g56560
Os.45897.1.S1_s_at--341--8171Chr01:32937624..32937648 (25 bp)
GGAACATGTGACCTTTACTTCTTGG
LOC_Os01g56560
Os.45897.1.S1_s_at--488--10531Chr01:32937661..32937685 (25 bp)
TTCAGTCGCCACTATATCGTCAGGT
LOC_Os01g56560
Target Sequence 
GTACTCGCCGGAGCAGATGTTCGCTGTTGTCGCGGCAGTAGACCTCTATGAGGATTTTGTGCCGTGGTGTCAGAGGTCTA
GGATTATCAGGCGACACGAGAATGGCTCGTTTGATGCTGAACTCGAAATTGGATTCAAGTTCCTTGTCGAGAGTTATGTT
TCTCATGTGGAGATGGAGAAGCCAAAATATATCAAGACGACAGCATCTGAAAGTGGACTTTTTGATCATTTGATAAATGT
TTGGGAGTTCAAGCCTGGTCCTGTTCCTGGAACATGTGACCTTTACTTCTTGGTTGATTTTAAGTTTCAGTCGCCACTAT
ATCGTCAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45897.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis