Browse Element(s) Details


Os.29865.1.S1_at

Description gb:AK109736.1
DB_XREF= gi:32994945
TID=Os.29865.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29865 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0695H10.11 (P0695H10.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-C09, full insert sequence.
FL= gb:AK109736.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5657010/11Core-2/I-Branching enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56520Os.18007.1.S1_s_at11/111+32913773..32918799Double-stranded RNA binding motif family protein, expressed
LOC_Os01g56520Os.18007.1.S1_at11/111+32913773..32918799Double-stranded RNA binding motif family protein, expressed
LOC_Os01g56530OsAffx.11623.1.S1_s_at11/111+32919844..32920762expressed protein
LOC_Os01g56530OsAffx.11623.1.S1_at9/111+32919844..32920762expressed protein
LOC_Os01g56540OsAffx.11623.1.S1_at2/111+32921208..32924113Pre-SET motif family protein, expressed
LOC_Os01g56540Os.54138.1.S1_at1/111+32921208..32924113Pre-SET motif family protein, expressed
LOC_Os01g56550Os.10968.1.S1_at11/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56550Os.32625.1.S1_s_at11/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56550Os.32625.2.S1_x_at10/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56560Os.45897.1.S1_at11/111+32935529..32937893aromatic-rich family protein, putative, expressed
LOC_Os01g56560Os.45897.1.S1_s_at11/111+32935529..32937893aromatic-rich family protein, putative, expressed
LOC_Os01g56560OsAffx.23810.1.S1_at10/111+32935529..32937893aromatic-rich family protein, putative, expressed
LOC_Os01g56570Os.29865.1.S1_at10/111+32938264..32939986Core-2/I-Branching enzyme family protein, expressed
LOC_Os01g56580Os.11591.1.S1_x_at11/111+32942542..32949739protein kinase family protein, putative, expressed
LOC_Os01g56580Os.11591.2.S1_at10/111+32942542..32949739protein kinase family protein, putative, expressed
LOC_Os01g56580Os.52563.1.S1_at1/111+32942542..32949739protein kinase family protein, putative, expressed
LOC_Os01g56590Os.23676.1.S1_at11/111+32951018..32973887HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016020cellular_componentmembrane
GO:0008375molecular_functionacetylglucosaminyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29865.1.S1_at--864--2071Chr01:32938607..32938631 (25 bp)
ACATTGACGTGGTCAGGCACGGCGC
LOC_Os01g56570
Os.29865.1.S1_at--405--4371Chr01:32938583..32938607 (25 bp)
CCAAGGGACGGAAGCTGGCGACCTT
LOC_Os01g56570
Os.29865.1.S1_at--562--4591Chr01:32938566..32938590 (25 bp)
GCGACCTTGGTGGTTGACCTCGTTG
LOC_Os01g56570
Os.29865.1.S1_at--151--7371Chr01:32938529..32938553 (25 bp)
GTGACGGGTCCAACAGTTCAGAGAA
LOC_Os01g56570
Os.29865.1.S1_at--688--2492Chr12:13246445..13246464 (20 bp)
AACAGTTTGATGTTTCACTGCTCAA
NONE
Os.29865.1.S1_at--176--10051Chr01:32938437..32938461 (25 bp)
TAGTGCAGGCCAAGTGCCCCTAAAA
LOC_Os01g56570
Os.29865.1.S1_at--262--9831Chr01:32938417..32938441 (25 bp)
TAAAATGCCTCTTCAGGCCAGCAGC
LOC_Os01g56570
Os.29865.1.S1_at--669--1511Chr01:32938398..32938422 (25 bp)
AGCAGCCCGGTGGTTGCGTCATACT
LOC_Os01g56570
Os.29865.1.S1_at--632--1732Chr06:6834517..6834536 (20 bp)
ACCATGGATCCAACGCATATTGCAT
NONE
Os.29865.1.S1_at--909--9851Chr01:32938281..32938305 (25 bp)
TACAAATCGCGGCTGTGCTCAACTT
LOC_Os01g56570
Os.29865.1.S1_at--849--10851Chr01:32938263..32938282 (20 bp)
TTGGCAGGCCGCCATTTGGAAAAAA
NONE
Target Sequence 
ACATTGACGTGGTCAGGCACGGCGCCAAGGGACGGAAGCTGGCGACCTTGGTGGTTGACCTCGTTGGGGCCTGACCGTGT
GACGGGTCCAACAGTTCAGAGAAAACGAGCAATGAGATGACAGATGAGCGGCAGAGGAACAGTTTGATGTTTCACTGCTC
AAAGAACAACTAGTGCAGGCCAAGTGCCCCTAAAATGCCTCTTCAGGCCAGCAGCCCGGTGGTTGCGTCATACTTTATTA
TTCACATGTACGAATGTACCATGGATCCAACGCATATTGCATTGGACAAAAAATGTGTGGCAAAGTGTTCGAGACTTATA
CAAGAATACAAATCGCGGCTGTGCTCAACTTGGCAGGCCGCCATTTGGAAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29865.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis