Browse Element(s) Details


OsAffx.23810.1.S1_at

Description tigr:9629.m05535
TID=OsAffx.23810.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Aromatic-Rich Protein Family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5656010/11aromatic-rich family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56510Os.35685.1.S1_at11/111+32907558..32912991Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os01g56520Os.18007.1.S1_s_at11/111+32913773..32918799Double-stranded RNA binding motif family protein, expressed
LOC_Os01g56520Os.18007.1.S1_at11/111+32913773..32918799Double-stranded RNA binding motif family protein, expressed
LOC_Os01g56530OsAffx.11623.1.S1_s_at11/111+32919844..32920762expressed protein
LOC_Os01g56530OsAffx.11623.1.S1_at9/111+32919844..32920762expressed protein
LOC_Os01g56540OsAffx.11623.1.S1_at2/111+32921208..32924113Pre-SET motif family protein, expressed
LOC_Os01g56540Os.54138.1.S1_at1/111+32921208..32924113Pre-SET motif family protein, expressed
LOC_Os01g56550Os.10968.1.S1_at11/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56550Os.32625.1.S1_s_at11/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56550Os.32625.2.S1_x_at10/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56560Os.45897.1.S1_at11/111+32935529..32937893aromatic-rich family protein, putative, expressed
LOC_Os01g56560Os.45897.1.S1_s_at11/111+32935529..32937893aromatic-rich family protein, putative, expressed
LOC_Os01g56560OsAffx.23810.1.S1_at10/111+32935529..32937893aromatic-rich family protein, putative, expressed
LOC_Os01g56570Os.29865.1.S1_at10/111+32938264..32939986Core-2/I-Branching enzyme family protein, expressed
LOC_Os01g56580Os.11591.1.S1_x_at11/111+32942542..32949739protein kinase family protein, putative, expressed
LOC_Os01g56580Os.11591.2.S1_at10/111+32942542..32949739protein kinase family protein, putative, expressed
LOC_Os01g56580Os.52563.1.S1_at1/111+32942542..32949739protein kinase family protein, putative, expressed
LOC_Os01g56590Os.23676.1.S1_at11/111+32951018..32973887HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23810.1.S1_at--580--7591Chr01:32935762..32935786 (25 bp)
GGGCACGCAGACGAGGTCCTTCCTT
LOC_Os01g56560
OsAffx.23810.1.S1_at--1103--1011Chr01:32935775..32935799 (25 bp)
AGGTCCTTCCTTGGATGCGGCGACG
LOC_Os01g56560
OsAffx.23810.1.S1_at--1051--2031Chr01:32937671..32937782 (25 bp)
ACTATATCGTCAGGTTGCTTCCATG
LOC_Os01g56560
OsAffx.23810.1.S1_at--1144--1231Chr01:32937794..32937818 (25 bp)
AGTTGTTTCCCGGTTAGTGAGCTCA
LOC_Os01g56560
OsAffx.23810.1.S1_at--1114--10151Chr01:32937800..32937824 (25 bp)
TTCCCGGTTAGTGAGCTCACTTAGT
LOC_Os01g56560
OsAffx.23810.1.S1_at--593--4831Chr01:32937814..32937838 (25 bp)
GCTCACTTAGTGATCGTTGTTATAG
LOC_Os01g56560
OsAffx.23810.1.S1_at--254--8791Chr01:32937831..32937855 (25 bp)
TGTTATAGAATTTATGGGCCTCCCA
LOC_Os01g56560
OsAffx.23810.1.S1_at--916--5191Chr01:32937838..32937862 (25 bp)
GAATTTATGGGCCTCCCATTCCTGT
LOC_Os01g56560
OsAffx.23810.1.S1_at--1124--4451Chr01:32937848..32937872 (25 bp)
GCCTCCCATTCCTGTGCTGGAAAAT
LOC_Os01g56560
OsAffx.23810.1.S1_at--122--9271Chr01:32937857..32937881 (25 bp)
TCCTGTGCTGGAAAATACTTATGGG
LOC_Os01g56560
OsAffx.23810.1.S1_at--1072--2011Chr01:32937873..32937897 (25 bp)
ACTTATGGGCAAGGAAGATAGACAA
NONE
Target Sequence 
GGGCACGCAGACGAGGTCCTTCCTTGGATGCGGCGACGGGGATGAGGGGAGCGTGCTCTCCAAGGTCTACGAGGAGAGGC
GCGTCATGGGGTACTCGCCGGAGCAGATGTTCGCTGTTGTCGCGGCAGTAGACCTCTATGAGGATTTTGTGCCGTGGTGT
CAGAGGTCTAGGATTATCAGGCGACACGAGAATGGCTCGTTTGATGCTGAACTCGAAATTGGATTCAAGTTCCTTGTCGA
GAGTTATGTTTCTCATGTGGAGATGGAGAAGCCAAAATATATCAAGACGACAGCATCTGAAAGTGGACTTTTTGATCATT
TGATAAATGTTTGGGAGTTCAAGCCTGGTCCTGTTCCTGGAACATGTGACCTTTACTTCTTGGTTGATTTTAAGTTTCAG
TCGCCACTATATCGTCAGGTTGCTTCCATGTTCTTCAAGGAAGTTGTTTCCCGGTTAGTGAGCTCACTTAGTGATCGTTG
TTATAGAATTTATGGGCCTCCCATTCCTGTGCTGGAAAATACTTATGGGCAAGGAAGATAGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23810.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis