Browse Element(s) Details


Os.54138.1.S1_at

Description gb:AK102109.1
DB_XREF= gi:32987318
TID=Os.54138.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54138 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033084E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033084E07, full insert sequence.
FL= gb:AK102109.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g565401/11Pre-SET motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56490Os.2185.1.S1_at11/111+32879763..32896419Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g56490Os.9363.2.S1_x_at1/111+32879763..32896419Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g56500OsAffx.23809.3.S1_at11/111+32900735..32902741expressed protein
LOC_Os01g56500OsAffx.23809.1.S1_x_at11/111+32900735..32902741expressed protein
LOC_Os01g56500OsAffx.23809.2.S1_x_at2/111+32900735..32902741expressed protein
LOC_Os01g56510Os.35685.1.S1_at11/111+32907558..32912991Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os01g56520Os.18007.1.S1_s_at11/111+32913773..32918799Double-stranded RNA binding motif family protein, expressed
LOC_Os01g56520Os.18007.1.S1_at11/111+32913773..32918799Double-stranded RNA binding motif family protein, expressed
LOC_Os01g56530OsAffx.11623.1.S1_s_at11/111+32919844..32920762expressed protein
LOC_Os01g56530OsAffx.11623.1.S1_at9/111+32919844..32920762expressed protein
LOC_Os01g56540OsAffx.11623.1.S1_at2/111+32921208..32924113Pre-SET motif family protein, expressed
LOC_Os01g56540Os.54138.1.S1_at1/111+32921208..32924113Pre-SET motif family protein, expressed
LOC_Os01g56550Os.10968.1.S1_at11/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56550Os.32625.1.S1_s_at11/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56550Os.32625.2.S1_x_at10/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56560Os.45897.1.S1_at11/111+32935529..32937893aromatic-rich family protein, putative, expressed
LOC_Os01g56560Os.45897.1.S1_s_at11/111+32935529..32937893aromatic-rich family protein, putative, expressed
LOC_Os01g56560OsAffx.23810.1.S1_at10/111+32935529..32937893aromatic-rich family protein, putative, expressed
LOC_Os01g56570Os.29865.1.S1_at10/111+32938264..32939986Core-2/I-Branching enzyme family protein, expressed
LOC_Os01g56580Os.11591.1.S1_x_at11/111+32942542..32949739protein kinase family protein, putative, expressed
LOC_Os01g56580Os.11591.2.S1_at10/111+32942542..32949739protein kinase family protein, putative, expressed
LOC_Os01g56580Os.52563.1.S1_at1/111+32942542..32949739protein kinase family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0042054molecular_functionhistone methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54138.1.S1_at--134--6091Chr02:31276576..31276600 (25 bp)
GATTAGGGCAGTGTTTTCAGGTAAA
NONE
Os.54138.1.S1_at--259--7331Chr02:31276549..31276573 (25 bp)
GTGCATTCAACTTATCTTCACAAGG
NONE
Os.54138.1.S1_at--647--7451Chr02:31276503..31276527 (25 bp)
GTGTCATACTGAATTAGCTCGGAAA
NONE
Os.54138.1.S1_at--951--3571Chr02:31276472..31276496 (25 bp)
CATATGCTAGGCCTTTTGCAGTTTA
NONE
Os.54138.1.S1_at--245--231Chr02:31276448..31276472 (25 bp)
ATATTGCAAGTTTTCCCATTGTAAT
NONE
Os.54138.1.S1_at--861--5651Chr02:31276415..31276439 (25 bp)
GACATGTATTGCTCAGATCATCTAC
NONE
Os.54138.1.S1_at--299--6431Chr02:31276400..31276424 (25 bp)
GATCATCTACCTTAGTGCCAGTTTT
NONE
Os.54138.1.S1_at--1056--9191Chr02:31276385..31276409 (25 bp)
TGCCAGTTTTGGTAGCTATGCCTAA
NONE
Os.54138.1.S1_at--435--4871Chr02:31276371..31276395 (25 bp)
GCTATGCCTAAGCTACTTTTGTAGC
NONE
Os.54138.1.S1_at--797--9691Chr02:31276316..31276340 (25 bp)
TCAAATGTTGCAGCATGCCAGTTGC
NONE
Os.54138.1.S1_at--898--4312Chr02:31276056..31276080 (25 bp)
CCTTGTGCTGTTCCGGTACTTCCTA
NONE
Target Sequence 
GATTAGGGCAGTGTTTTCAGGTAAAAAGTGCATTCAACTTATCTTCACAAGGAAATGGTATATGAAATTGTTGGTGTCAT
ACTGAATTAGCTCGGAAAGCACTACATATGCTAGGCCTTTTGCAGTTTATATTGCAAGTTTTCCCATTGTAATTATGGGC
AGACATGTATTGCTCAGATCATCTACCTTAGTGCCAGTTTTGGTAGCTATGCCTAAGCTACTTTTGTAGCATATGTGTTA
AGGTTTGAAGTTTTTGTTTTCAAATGTTGCAGCATGCCAGTTGCTTACATTTGGTGGAATGATCTTCTCGAGTGGCTTCT
TCTGTGGCAATGAAGGGTCAGTGAGCGATGGCAGCCGGAACTCGTGCATCATCCAGTCAGTTTTGACGCCTTTAGCTGCT
CTGCCCTTGTAGAAGACAAGGGACTTCTTCAAGCCTATGCACTTTGATCCATCGGAGGAGTAGATTGGCCTATCGGTTCC
AGTGGCCTTCCAGAAACCTGCTCCAGTCACCCTGTTTGGCCTTGTGCTGTTCCGGTACTTCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54138.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis