Browse Element(s) Details


Os.11591.2.S1_at

Description gb:AK104917.1
DB_XREF= gi:32990126
TID=Os.11591.2
CNT=27
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11591 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative casein kinase (P0695H10.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-047-F04, full insert sequence.
FL= gb:AK069612.1 gb:AK104917.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5658010/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56520Os.18007.1.S1_s_at11/111+32913773..32918799Double-stranded RNA binding motif family protein, expressed
LOC_Os01g56520Os.18007.1.S1_at11/111+32913773..32918799Double-stranded RNA binding motif family protein, expressed
LOC_Os01g56530OsAffx.11623.1.S1_s_at11/111+32919844..32920762expressed protein
LOC_Os01g56530OsAffx.11623.1.S1_at9/111+32919844..32920762expressed protein
LOC_Os01g56540OsAffx.11623.1.S1_at2/111+32921208..32924113Pre-SET motif family protein, expressed
LOC_Os01g56540Os.54138.1.S1_at1/111+32921208..32924113Pre-SET motif family protein, expressed
LOC_Os01g56550Os.10968.1.S1_at11/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56550Os.32625.1.S1_s_at11/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56550Os.32625.2.S1_x_at10/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56560Os.45897.1.S1_at11/111+32935529..32937893aromatic-rich family protein, putative, expressed
LOC_Os01g56560Os.45897.1.S1_s_at11/111+32935529..32937893aromatic-rich family protein, putative, expressed
LOC_Os01g56560OsAffx.23810.1.S1_at10/111+32935529..32937893aromatic-rich family protein, putative, expressed
LOC_Os01g56570Os.29865.1.S1_at10/111+32938264..32939986Core-2/I-Branching enzyme family protein, expressed
LOC_Os01g56580Os.11591.1.S1_x_at11/111+32942542..32949739protein kinase family protein, putative, expressed
LOC_Os01g56580Os.11591.2.S1_at10/111+32942542..32949739protein kinase family protein, putative, expressed
LOC_Os01g56580Os.52563.1.S1_at1/111+32942542..32949739protein kinase family protein, putative, expressed
LOC_Os01g56590Os.23676.1.S1_at11/111+32951018..32973887HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11591.2.S1_at--716--5191Chr01:32949547..32949571 (25 bp)
GCAATAATGTTGCATTACTGATCAT
LOC_Os01g56580
Os.11591.2.S1_at--569--1971Chr01:32949563..32949587 (25 bp)
ACTGATCATCTTTTTACATCTTGTG
LOC_Os01g56580
Os.11591.2.S1_at--606--9611Chr01:32949568..32949592 (25 bp)
TCATCTTTTTACATCTTGTGCACAG
LOC_Os01g56580
Os.11591.2.S1_at--118--8691Chr01:32949584..32949608 (25 bp)
TGTGCACAGCGATATTCATGAAGTA
LOC_Os01g56580
Os.11591.2.S1_at--67--4631Chr01:32949592..32949616 (25 bp)
GCGATATTCATGAAGTACCACTTGA
LOC_Os01g56580
Os.11591.2.S1_at--680--6971Chr01:32949606..32949630 (25 bp)
GTACCACTTGAGAGAGCGGCATCCA
LOC_Os01g56580
Os.11591.2.S1_at--741--1371Chr01:32949618..32949642 (25 bp)
AGAGCGGCATCCATGAAAAGTCACT
LOC_Os01g56580
Os.11591.2.S1_at--910--4171Chr01:32949668..32949692 (25 bp)
CCCTATTGTCACGATGCTCCTCAGA
LOC_Os01g56580
Os.11591.2.S1_at--1118--8411Chr01:32949694..32949718 (25 bp)
GGCCGTTGGTCCTACAATTTGATGT
LOC_Os01g56580
Os.11591.2.S1_at--1139--4031Chr01:32949697..32949721 (25 bp)
CGTTGGTCCTACAATTTGATGTCAA
LOC_Os01g56580
Os.11591.2.S1_at--330--8731Chr01:32949716..32949740 (25 bp)
TGTCAAGTTTGACATTCCTTTTGCA
NONE
Target Sequence 
GCAATAATGTTGCATTACTGATCATCTTTTTACATCTTGTGCACAGCGATATTCATGAAGTACCACTTGAGAGAGCGGCA
TCCATGAAAAGTCACTNCCCAGAGGGTGNATTATCACGATACNCCCTATTGTCACGATGCTCCTCAGANGGCCGTTGGTC
CTACAATTTGATGTCAAGTTTGACATTCCTTTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11591.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis