Browse Element(s) Details


OsAffx.11623.1.S1_s_at

Description gb:NM_191430.1
DB_XREF= gi:34909943
GEN=P0695H10.8
TID=OsAffx.11623.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0695H10.8 (P0695H10.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5653011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56490Os.2185.1.S1_at11/111+32879763..32896419Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g56490Os.9363.2.S1_x_at1/111+32879763..32896419Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g56500OsAffx.23809.3.S1_at11/111+32900735..32902741expressed protein
LOC_Os01g56500OsAffx.23809.1.S1_x_at11/111+32900735..32902741expressed protein
LOC_Os01g56500OsAffx.23809.2.S1_x_at2/111+32900735..32902741expressed protein
LOC_Os01g56510Os.35685.1.S1_at11/111+32907558..32912991Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os01g56520Os.18007.1.S1_s_at11/111+32913773..32918799Double-stranded RNA binding motif family protein, expressed
LOC_Os01g56520Os.18007.1.S1_at11/111+32913773..32918799Double-stranded RNA binding motif family protein, expressed
LOC_Os01g56530OsAffx.11623.1.S1_s_at11/111+32919844..32920762expressed protein
LOC_Os01g56530OsAffx.11623.1.S1_at9/111+32919844..32920762expressed protein
LOC_Os01g56540OsAffx.11623.1.S1_at2/111+32921208..32924113Pre-SET motif family protein, expressed
LOC_Os01g56540Os.54138.1.S1_at1/111+32921208..32924113Pre-SET motif family protein, expressed
LOC_Os01g56550Os.10968.1.S1_at11/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56550Os.32625.1.S1_s_at11/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56550Os.32625.2.S1_x_at10/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56560Os.45897.1.S1_at11/111+32935529..32937893aromatic-rich family protein, putative, expressed
LOC_Os01g56560Os.45897.1.S1_s_at11/111+32935529..32937893aromatic-rich family protein, putative, expressed
LOC_Os01g56560OsAffx.23810.1.S1_at10/111+32935529..32937893aromatic-rich family protein, putative, expressed
LOC_Os01g56570Os.29865.1.S1_at10/111+32938264..32939986Core-2/I-Branching enzyme family protein, expressed
LOC_Os01g56580Os.11591.1.S1_x_at11/111+32942542..32949739protein kinase family protein, putative, expressed
LOC_Os01g56580Os.11591.2.S1_at10/111+32942542..32949739protein kinase family protein, putative, expressed
LOC_Os01g56580Os.52563.1.S1_at1/111+32942542..32949739protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11623.1.S1_s_at--1043--1011Chr01:32920142..32920166 (25 bp)
AGGTATCTCTCCTGCAAGGGCAGCT
LOC_Os01g56530
OsAffx.11623.1.S1_s_at--899--2871Chr01:32920127..32920151 (25 bp)
AAGGGCAGCTCTCCGTCCTGGAGTC
LOC_Os01g56530
OsAffx.11623.1.S1_s_at--742--8551Chr01:32920109..32920133 (25 bp)
TGGAGTCTCAGCTCTTCAACCTGCG
LOC_Os01g56530
OsAffx.11623.1.S1_s_at--348--10511Chr01:32920095..32920119 (25 bp)
TTCAACCTGCGGGTGGCCTTGGCGA
LOC_Os01g56530
OsAffx.11623.1.S1_s_at--965--1491Chr01:32920046..32920070 (25 bp)
AGCACTTCGTCGTGCTGCAGCCGGC
LOC_Os01g56530
OsAffx.11623.1.S1_s_at--253--4011Chr01:32920010..32920034 (25 bp)
CGTCCACGCTGAACCAGGTGGTGGT
LOC_Os01g56530
OsAffx.11623.1.S1_s_at--226--7491Chr01:32919993..32920017 (25 bp)
GTGGTGGTGAACTACGACGACCTCC
LOC_Os01g56530
OsAffx.11623.1.S1_s_at--428--5091Chr01:32919967..32919991 (25 bp)
GCACGCCGTGGATTTCATGGACGCG
LOC_Os01g56530
OsAffx.11623.1.S1_s_at--1110--8551Chr01:32919959..32919983 (25 bp)
TGGATTTCATGGACGCGGAGCCCGC
LOC_Os01g56530
OsAffx.11623.1.S1_s_at--422--2771Chr01:32919881..32919905 (25 bp)
AAGACGAGGGCCACCGAGACATGAA
LOC_Os01g56530
OsAffx.11623.1.S1_s_at--1091--1071Chr01:32919875..32919899 (25 bp)
AGGGCCACCGAGACATGAACCTCTT
LOC_Os01g56530
Target Sequence 
AGGTATCTCTCCTGCAAGGGCAGCTCTCCGTCCTGGAGTCTCAGCTCTTCAACCTGCGGGTGGCCTTGGCGAGCGCGCAC
CCCGACACGCCGCCGCAGCACTTCGTCGTGCTGCAGCCGGCGCACTCCGCGGCGTCCACGCTGAACCAGGTGGTGGTGAA
CTACGACGACCTCCCGCACGCCGTGGATTTCATGGACGCGGAGCCCGCCGCGCTGAGGGGACTAGAGTCTCTCCAGCTCT
CGCAGCCACTGCAGCGGGAGGAAGACGAGGGCCACCGAGACATGAACCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11623.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis