Browse Element(s) Details


OsAffx.23809.3.S1_at

Description tigr:9629.m05528
TID=OsAffx.23809.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5650011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56490Os.2185.1.S1_at11/111+32879763..32896419Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g56490Os.9363.2.S1_x_at1/111+32879763..32896419Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g56500OsAffx.23809.3.S1_at11/111+32900735..32902741expressed protein
LOC_Os01g56500OsAffx.23809.1.S1_x_at11/111+32900735..32902741expressed protein
LOC_Os01g56500OsAffx.23809.2.S1_x_at2/111+32900735..32902741expressed protein
LOC_Os01g56510Os.35685.1.S1_at11/111+32907558..32912991Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os01g56520Os.18007.1.S1_s_at11/111+32913773..32918799Double-stranded RNA binding motif family protein, expressed
LOC_Os01g56520Os.18007.1.S1_at11/111+32913773..32918799Double-stranded RNA binding motif family protein, expressed
LOC_Os01g56530OsAffx.11623.1.S1_s_at11/111+32919844..32920762expressed protein
LOC_Os01g56530OsAffx.11623.1.S1_at9/111+32919844..32920762expressed protein
LOC_Os01g56540OsAffx.11623.1.S1_at2/111+32921208..32924113Pre-SET motif family protein, expressed
LOC_Os01g56540Os.54138.1.S1_at1/111+32921208..32924113Pre-SET motif family protein, expressed
LOC_Os01g56550Os.10968.1.S1_at11/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56550Os.32625.1.S1_s_at11/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os01g56550Os.32625.2.S1_x_at10/111+32924932..32928652Transcription initiation factor IIF, beta subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23809.3.S1_at--979--3191Chr01:32901271..32901295 (25 bp)
CAATGCGCTGTCACGGTGATCCTTA
LOC_Os01g56500
OsAffx.23809.3.S1_at--612--8731Chr01:32901263..32901287 (25 bp)
TGTCACGGTGATCCTTATGGCGATT
LOC_Os01g56500
OsAffx.23809.3.S1_at--514--6371Chr01:32901254..32901278 (25 bp)
GATCCTTATGGCGATTTGCTTAGCG
LOC_Os01g56500
OsAffx.23809.3.S1_at--336--211Chr01:32901241..32901265 (25 bp)
ATTTGCTTAGCGCTCCCGGTGTACG
LOC_Os01g56500
OsAffx.23809.3.S1_at--998--9111Chr01:32901214..32901238 (25 bp)
TGCTGGGCTAGCGTATACGGCTACA
LOC_Os01g56500
OsAffx.23809.3.S1_at--356--6611Chr01:32900853..32900877 (25 bp)
GATTGGATGATTGCTGCGGTCAACT
LOC_Os01g56500
OsAffx.23809.3.S1_at--573--71Chr01:32900844..32900868 (25 bp)
ATTGCTGCGGTCAACTACCTGTGAT
LOC_Os01g56500
OsAffx.23809.3.S1_at--502--2531Chr01:32900832..32900856 (25 bp)
AACTACCTGTGATGCTGTGGCGCAC
LOC_Os01g56500
OsAffx.23809.3.S1_at--312--1931Chr01:32900809..32900833 (25 bp)
ACGGCTGTGGTACATGGCCAGCCAC
LOC_Os01g56500
OsAffx.23809.3.S1_at--786--7551Chr01:32900782..32900806 (25 bp)
GGGCCATTCCTTTGCAAGGTCTCCC
LOC_Os01g56500
OsAffx.23809.3.S1_at--686--3211Chr01:32900768..32900792 (25 bp)
CAAGGTCTCCCCTATGTTGAAGGAT
LOC_Os01g56500
Target Sequence 
CAATGCGCTGTCACGGTGATCCTTATGGCGATTTGCTTAGCGCTCCCGGTGTACGGGTGCTGGGCTAGCGTATACGGCTA
CAAGACGCCCGATTTCTGGGTGAAGGTGCCCGGCATCGAGGGGCTCGAGAGGGGCCCCAGCGCGTTGGCCGCGCCCGTCT
TCAACGTCACCCTCCGCGTCGATAACGAAGCCACGCGCCGGCCGTTCTGCACCAGCCGAGCCAGCGCGGCGGTGTCGTAC
GCAGGCGTGCAGCTCGGCCACGTCGACCTCCCCGGCGGGTTCTGCGTGCCGGGGCAGGTGGTCAGCTCCGTGCCAATCGT
GGCGACCAGCGACGGACTGGGGATACCCAGCGAGCTCTACGAGCGTATGGAGAGCCAGCGGCGGCGGCACGAGCGGGTGT
CGTTGGAGGTGCAGGTGAGATTGGATGATTGCTGCGGTCAACTACCTGTGATGCTGTGGCGCACGGCTGTGGTACATGGC
CAGCCACAGGGGCCATTCCTTTGCAAGGTCTCCCCTATGTTGAAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23809.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis