Browse Element(s) Details


Os.9363.2.S1_x_at

Description gb:D29720.1
DB_XREF= gi:473996
TID=Os.9363.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.9363 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA, partial homologous to ribosomal protein L7 gene
DEF=Rice mRNA, partial homologous to ribosomal protein L7 gene.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5163010/1160S ribosomal protein L7-1, putative, expressed
LOC_Os05g258401/11ABC1 family protein, expressed
LOC_Os01g564901/11Ubiquitin carboxyl-terminal hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51610Os.28422.1.S1_at11/114+30353060..30365210Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed
LOC_Os04g51620NANA4+30375103..30376055hypothetical protein
LOC_Os04g51630Os.9363.2.S1_x_at10/114+30380850..3038326060S ribosomal protein L7-1, putative, expressed
LOC_Os04g51630Os.9363.1.S1_at10/114+30380850..3038326060S ribosomal protein L7-1, putative, expressed
LOC_Os04g51640OsAffx.26563.1.S1_at11/114+30386746..30387750hypothetical protein
LOC_Os04g51650OsAffx.14369.1.S1_at11/114+30388565..30388873hypothetical protein
LOC_Os04g51660Os.53597.1.S1_at11/114+30389791..30391315Transferase family protein, expressed
LOC_Os04g51680NANA4+30396879..30397094hypothetical protein
LOC_Os04g51690Os.11439.1.S1_at11/114+30402082..30409268Glycosyl hydrolase family 47 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9363.2.S1_x_at--363--5292Chr04:30382883..30382907 (25 bp)
GAAGGCACCACTGGGTGGGCTGAAG
LOC_Os04g51630
Os.9363.2.S1_x_at--518--4371Chr04:30382919..30382943 (25 bp)
CCACTACGTTGAGGGTGGTGATGCT
LOC_Os04g51630
Os.9363.2.S1_x_at--6--7411Chr04:30382936..30382960 (25 bp)
GTGATGCTGGTAACCGTGAGAACTA
LOC_Os04g51630
Os.9363.2.S1_x_at--1023--6311Chr04:30382982..30383006 (25 bp)
GATGAACTAGTTCCATGAGCTCATT
LOC_Os04g51630
Os.9363.2.S1_x_at--630--6691Chr04:30382991..30383015 (25 bp)
GTTCCATGAGCTCATTGTTAGCGCA
LOC_Os04g51630
Os.9363.2.S1_x_at--354--5911Chr04:30382998..30383022 (25 bp)
GAGCTCATTGTTAGCGCACTGTGTT
LOC_Os04g51630
Os.9363.2.S1_x_at--644--1651Chr04:30383010..30383034 (25 bp)
AGCGCACTGTGTTTGGATGATATTT
LOC_Os04g51630
Os.9363.2.S1_x_at--1115--7051Chr04:30383039..30383063 (25 bp)
GTAAGCTTATTTTGCACTAGGAAGT
LOC_Os04g51630
Os.9363.2.S1_x_at--874--5512Chr05:14965903..14966353 (25 bp)
GAAAATCTTGCAATTTTGATATTCA
LOC_Os05g25840
Os.9363.2.S1_x_at--577--91NONE
ATTCAGAATCCTGACCCTTTTATCC
NONE
Os.9363.2.S1_x_at--669--1471Chr04:30382664..30383118 (25 bp)
AGAATCCTGACCCTTTTATCCGGTG
LOC_Os04g51630
Target Sequence 
GAAGGCACCACTGGGTGGGCTGAAGAAGAAGAGGAACCACTACGTTGAGGGTGGTGATGCTGGTAACCGTGAGAACTACA
TCAACGAACTCATCAGAAGGATGAACTAGTTCCATGAGCTCATTGTTAGCGCACTGTGTTTGGATGATATTTTAAAGTAA
GCTTATTTTGCACTAGGAAGTGTATCAAGAAAATCTTGCAATTTTGATATTCAGAATCCTGACCCTTTTATCCGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9363.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis