Browse Element(s) Details


OsAffx.14369.1.S1_at

Description tigr:9632.m04994
TID=OsAffx.14369.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5165011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51610Os.28422.1.S1_at11/114+30353060..30365210Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed
LOC_Os04g51620NANA4+30375103..30376055hypothetical protein
LOC_Os04g51630Os.9363.2.S1_x_at10/114+30380850..3038326060S ribosomal protein L7-1, putative, expressed
LOC_Os04g51630Os.9363.1.S1_at10/114+30380850..3038326060S ribosomal protein L7-1, putative, expressed
LOC_Os04g51640OsAffx.26563.1.S1_at11/114+30386746..30387750hypothetical protein
LOC_Os04g51650OsAffx.14369.1.S1_at11/114+30388565..30388873hypothetical protein
LOC_Os04g51660Os.53597.1.S1_at11/114+30389791..30391315Transferase family protein, expressed
LOC_Os04g51680NANA4+30396879..30397094hypothetical protein
LOC_Os04g51690Os.11439.1.S1_at11/114+30402082..30409268Glycosyl hydrolase family 47 protein, expressed
LOC_Os04g51700OsAffx.4148.1.S1_at11/114+30410572..30419719DNA ligase I, ATP-dependent family protein, expressed
LOC_Os04g51700Os.5598.1.S1_at11/114+30410572..30419719DNA ligase I, ATP-dependent family protein, expressed
LOC_Os04g51700Os.5598.1.S1_s_at11/114+30410572..30419719DNA ligase I, ATP-dependent family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14369.1.S1_at--454--1971Chr04:30388607..30388631 (25 bp)
ACTGACATGGCGTCGGTCTTCTCCA
LOC_Os04g51650
OsAffx.14369.1.S1_at--654--851Chr04:30388613..30388637 (25 bp)
ATGGCGTCGGTCTTCTCCACGGACA
LOC_Os04g51650
OsAffx.14369.1.S1_at--290--7031Chr04:30388681..30388705 (25 bp)
GTACACGCCGAAACCTCGTCGATGC
LOC_Os04g51650
OsAffx.14369.1.S1_at--52--6211Chr04:30388741..30388765 (25 bp)
GAGGCCCTCGGTGATGGTTGGTGAA
LOC_Os04g51650
OsAffx.14369.1.S1_at--390--8991Chr04:30388762..30388786 (25 bp)
TGAAGGACCGACTCTGACTAGTTGG
LOC_Os04g51650
OsAffx.14369.1.S1_at--334--931Chr04:30388765..30388789 (25 bp)
AGGACCGACTCTGACTAGTTGGGAC
LOC_Os04g51650
OsAffx.14369.1.S1_at--600--1791Chr04:30388768..30388792 (25 bp)
ACCGACTCTGACTAGTTGGGACGGG
LOC_Os04g51650
OsAffx.14369.1.S1_at--1041--7591Chr04:30388791..30388815 (25 bp)
GGGAAGCTTTCAACCTTTGGCTCCA
LOC_Os04g51650
OsAffx.14369.1.S1_at--807--2631Chr04:30388802..30388826 (25 bp)
AACCTTTGGCTCCAGCATCGTGAAG
LOC_Os04g51650
OsAffx.14369.1.S1_at--916--8311Chr04:30388809..30388833 (25 bp)
GGCTCCAGCATCGTGAAGCTTTCAA
LOC_Os04g51650
OsAffx.14369.1.S1_at--368--9231Chr04:30388812..30388836 (25 bp)
TCCAGCATCGTGAAGCTTTCAACAA
LOC_Os04g51650
Target Sequence 
ACTGACATGGCGTCGGTCTTCTCCACGGACACGACGTCCACCTTCGCCGCCCTCCCGAACCCGAAGTCCACGTCGTACAC
GCCGAAACCTCGTCGATGCCGGCGGCGACAGCGGTCAGCGGTGCAGGCCGTGAGGAGGCCCTCGGTGATGGTTGGTGAAG
GACCGACTCTGACTAGTTGGGACGGGGAAGCTTTCAACCTTTGGCTCCAGCATCGTGAAGCTTTCAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14369.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis