Browse Element(s) Details


OsAffx.4148.1.S1_at

Description tigr:9632.m04999
TID=OsAffx.4148.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DNA ligase I, ATP-dependent (dnl1), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5170011/11DNA ligase I, ATP-dependent family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51640OsAffx.26563.1.S1_at11/114+30386746..30387750hypothetical protein
LOC_Os04g51650OsAffx.14369.1.S1_at11/114+30388565..30388873hypothetical protein
LOC_Os04g51660Os.53597.1.S1_at11/114+30389791..30391315Transferase family protein, expressed
LOC_Os04g51680NANA4+30396879..30397094hypothetical protein
LOC_Os04g51690Os.11439.1.S1_at11/114+30402082..30409268Glycosyl hydrolase family 47 protein, expressed
LOC_Os04g51700OsAffx.4148.1.S1_at11/114+30410572..30419719DNA ligase I, ATP-dependent family protein, expressed
LOC_Os04g51700Os.5598.1.S1_at11/114+30410572..30419719DNA ligase I, ATP-dependent family protein, expressed
LOC_Os04g51700Os.5598.1.S1_s_at11/114+30410572..30419719DNA ligase I, ATP-dependent family protein, expressed
LOC_Os04g51710Os.47950.1.S1_at11/114+30423048..30426765expressed protein
LOC_Os04g51720Os.28943.1.S1_x_at1/114+30430106..30433317retrotransposon protein, putative, unclassified
LOC_Os04g51730NANA4+30434108..30436108retrotransposon protein, putative, unclassified
LOC_Os04g51740Os.27691.2.S1_x_at1/114+30438298..30444203retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0006281biological_processDNA repair
GO:0006310biological_processDNA recombination
GO:0003910molecular_functionDNA ligase (ATP) activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4148.1.S1_at--710--2711Chr04:30411214..30411238 (25 bp)
AAGCAGCCCAAAACACGAACGCAAC
LOC_Os04g51700
OsAffx.4148.1.S1_at--977--2591Chr04:30411197..30411221 (25 bp)
AACGCAACCAAACAGTTCTTAGAAG
LOC_Os04g51700
OsAffx.4148.1.S1_at--835--1211Chr04:30411184..30411208 (25 bp)
AGTTCTTAGAAGAGACACCGCTGAA
LOC_Os04g51700
OsAffx.4148.1.S1_at--81--5991Chr04:30411173..30411197 (25 bp)
GAGACACCGCTGAAACAACGAGTAG
LOC_Os04g51700
OsAffx.4148.1.S1_at--254--2411Chr04:30411161..30411185 (25 bp)
AAACAACGAGTAGCGCAACGTGCGA
LOC_Os04g51700
OsAffx.4148.1.S1_at--1157--2131Chr04:30411127..30411151 (25 bp)
ACAGATGGTTGATCCGCTGCACGCA
LOC_Os04g51700
OsAffx.4148.1.S1_at--202--831Chr04:30411123..30411147 (25 bp)
ATGGTTGATCCGCTGCACGCAATGC
LOC_Os04g51700
OsAffx.4148.1.S1_at--286--9031Chr04:30411110..30411134 (25 bp)
TGCACGCAATGCTCCTGGACATGAT
LOC_Os04g51700
OsAffx.4148.1.S1_at--26--3031Chr04:30411103..30411127 (25 bp)
AATGCTCCTGGACATGATTCCATCG
LOC_Os04g51700
OsAffx.4148.1.S1_at--927--711Chr04:30411090..30411114 (25 bp)
ATGATTCCATCGCTTGGCCAGATGA
LOC_Os04g51700
OsAffx.4148.1.S1_at--433--4931Chr04:30411079..30411103 (25 bp)
GCTTGGCCAGATGAAGACGGACGTT
LOC_Os04g51700
Target Sequence 
AAGCAGCCCAAAACACGAACGCAACCAAACAGTTCTTAGAAGAGACACCGCTGAAACAACGAGTAGCGCAACGTGCGAGA
AGATGGAACAGATGGTTGATCCGCTGCACGCAATGCTCCTGGACATGATTCCATCGCTTGGCCAGATGAAGACGGACGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4148.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis