Browse Element(s) Details


Os.47950.1.S1_at

Description gb:AK068251.1
DB_XREF= gi:32978269
TID=Os.47950.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47950 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013145H18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013145H18, full insert sequence.
FL= gb:AK068251.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5171011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51690Os.11439.1.S1_at11/114+30402082..30409268Glycosyl hydrolase family 47 protein, expressed
LOC_Os04g51700OsAffx.4148.1.S1_at11/114+30410572..30419719DNA ligase I, ATP-dependent family protein, expressed
LOC_Os04g51700Os.5598.1.S1_at11/114+30410572..30419719DNA ligase I, ATP-dependent family protein, expressed
LOC_Os04g51700Os.5598.1.S1_s_at11/114+30410572..30419719DNA ligase I, ATP-dependent family protein, expressed
LOC_Os04g51710Os.47950.1.S1_at11/114+30423048..30426765expressed protein
LOC_Os04g51720Os.28943.1.S1_x_at1/114+30430106..30433317retrotransposon protein, putative, unclassified
LOC_Os04g51730NANA4+30434108..30436108retrotransposon protein, putative, unclassified
LOC_Os04g51740Os.27691.2.S1_x_at1/114+30438298..30444203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g51750NANA4+30447322..30451287retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004221molecular_functionubiquitin thiolesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47950.1.S1_at--102--10491Chr04:30423557..30423581 (25 bp)
TTAAGGAAGGCAGCACCGTGAGTGT
LOC_Os04g51710
Os.47950.1.S1_at--372--731Chr04:30423498..30423522 (25 bp)
ATGATTGTTCCTCCACCAGAGCCCA
LOC_Os04g51710
Os.47950.1.S1_at--86--5851Chr04:30423432..30423456 (25 bp)
GACCTTTATGGATTAGTCCTGAGAT
LOC_Os04g51710
Os.47950.1.S1_at--704--10151Chr04:30423391..30423415 (25 bp)
TATCGATGTCATAGCGGTTTAGCAA
LOC_Os04g51710
Os.47950.1.S1_at--825--10451Chr04:30423373..30423397 (25 bp)
TTAGCAAGCTGGGTGTTGGAACTTA
LOC_Os04g51710
Os.47950.1.S1_at--394--10231Chr04:30423313..30423337 (25 bp)
TTTGACTTGGAGTTTGTTTCGTGGA
LOC_Os04g51710
Os.47950.1.S1_at--953--7671Chr04:30423219..30423243 (25 bp)
GGGTTTGGATGTATAGTCTTTTCTT
LOC_Os04g51710
Os.47950.1.S1_at--247--10331Chr04:30423178..30423202 (25 bp)
TTTCACCTATTCCTCGGTTATGAGC
LOC_Os04g51710
Os.47950.1.S1_at--113--1511Chr04:30423156..30423180 (25 bp)
AGCACTGAATGCTTGTCTTGTGAAA
LOC_Os04g51710
Os.47950.1.S1_at--847--6791Chr04:30423119..30423143 (25 bp)
GTTATTACTACCATCCAGCTGTTTG
LOC_Os04g51710
Os.47950.1.S1_at--1079--3691Chr04:30423049..30423073 (25 bp)
CTAGATGTATCACTGCTGTTAAAGC
LOC_Os04g51710
Target Sequence 
TTAAGGAAGGCAGCACCGTGAGTGTGATGGGGNTTGTTCAAAAGAATGACAACGTGTTGATGATTGTTCCTCCACCAGAG
CCCATCTCTACTGGTTGCCAGTGGGCCAAGTGTGTCCTCCCANGGGACCTTTATGGATTAGTCCTGAGATGTGAAGATAC
CTCAAATATCGATGTCATAGCGGTTTAGCAAGCTGGGTGTTGGAACTTAGANGAGCTGCTGCTGAAGAAGTGCTTTTTAA
ATGTTTTGACTTGGAGTTTGTTTCGTGGAATGTTAGAATTGAGAAAAATGTACAAATGTTGGGGATGATTAAGGTTAGTA
AAAATAGATGTTAAGCTGGGGTTTGGATGTATAGTCTTTTCTTGTATTTTGTCCTTTCTTTTCACCTATTCCTCGGTTAT
GAGCACTGAATGCTTGTCTTGTGAAATATGATGGCTTGGTTATTACTACCATCCAGCTGTTTGAAGACTTAGTGAAATTG
GGTAAACAACTATATATGTTTTTTTCAACTAGATGTATCACTGCTGTTAAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47950.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis