Browse Element(s) Details


Os.53597.1.S1_at

Description gb:AK073495.1
DB_XREF= gi:32983518
TID=Os.53597.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53597 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044F12, full insert sequence.
FL= gb:AK105836.1 gb:AK073495.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5166011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51610Os.28422.1.S1_at11/114+30353060..30365210Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed
LOC_Os04g51620NANA4+30375103..30376055hypothetical protein
LOC_Os04g51630Os.9363.2.S1_x_at10/114+30380850..3038326060S ribosomal protein L7-1, putative, expressed
LOC_Os04g51630Os.9363.1.S1_at10/114+30380850..3038326060S ribosomal protein L7-1, putative, expressed
LOC_Os04g51640OsAffx.26563.1.S1_at11/114+30386746..30387750hypothetical protein
LOC_Os04g51650OsAffx.14369.1.S1_at11/114+30388565..30388873hypothetical protein
LOC_Os04g51660Os.53597.1.S1_at11/114+30389791..30391315Transferase family protein, expressed
LOC_Os04g51680NANA4+30396879..30397094hypothetical protein
LOC_Os04g51690Os.11439.1.S1_at11/114+30402082..30409268Glycosyl hydrolase family 47 protein, expressed
LOC_Os04g51700OsAffx.4148.1.S1_at11/114+30410572..30419719DNA ligase I, ATP-dependent family protein, expressed
LOC_Os04g51700Os.5598.1.S1_at11/114+30410572..30419719DNA ligase I, ATP-dependent family protein, expressed
LOC_Os04g51700Os.5598.1.S1_s_at11/114+30410572..30419719DNA ligase I, ATP-dependent family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53597.1.S1_at--104--2551Chr04:30390295..30390319 (25 bp)
AACTGCATCGGCCCGGGCTTTGCCA
LOC_Os04g51660
Os.53597.1.S1_at--218--4871Chr04:30390279..30390303 (25 bp)
GCTTTGCCACGGCACACGAGACGGA
LOC_Os04g51660
Os.53597.1.S1_at--408--6231Chr04:30390229..30390253 (25 bp)
GATGGCCTCTTCACGGCTTGCGCCG
LOC_Os04g51660
Os.53597.1.S1_at--739--4611Chr04:30390171..30390195 (25 bp)
GCGAGCCGACATACTGGGAGCGGTG
LOC_Os04g51660
Os.53597.1.S1_at--658--771Chr04:30390112..30390136 (25 bp)
ATGTCGCTGTCCGTGGCAGGATCGA
LOC_Os04g51660
Os.53597.1.S1_at--364--771Chr04:30390004..30390028 (25 bp)
ATGTCGGTGGCCGAGGACCGTTCCG
LOC_Os04g51660
Os.53597.1.S1_at--515--3491Chr04:30389936..30389960 (25 bp)
CATGGAGCGGTTCCGGAGGTGGCTC
LOC_Os04g51660
Os.53597.1.S1_at--1114--9371Chr04:30389887..30389911 (25 bp)
TCGTCTTCCCACTGCAACTAGCTAG
LOC_Os04g51660
Os.53597.1.S1_at--1084--6871Chr04:30389838..30389862 (25 bp)
GTATTTTGCTTGAATTCTAGAACTT
LOC_Os04g51660
Os.53597.1.S1_at--727--9532Chr03:36276963..36276982 (20 bp)
TCTAGAACTTTGAATTTATTACCCT
NONE
Os.53597.1.S1_at--88--2271Chr04:30389795..30389819 (25 bp)
AAATCTAATCCTTTGAATCTTTTGG
LOC_Os04g51660
Target Sequence 
AACTGCATCGGCCCGGGCTTTGCCACGGCACACGAGACGGAGCTCGCCACCACCACCACCACCGCCGATGGCCTCTTCAC
GGCTTGCGCCGCGGTCGCCGCCGGCATCGACGAGGCGGTGCGCGGCGAGCCGACATACTGGGAGCGGTGGGTGGAGCGCA
TCACCGAGGCGTGCGCGGACGACATGTCGCTGTCCGTGGCAGGATCGACGAGGTTCGGCGTGTACGACATGGACTTCGGG
TTCGGGAGGCCGGCGAAGGTGGATGTCGTGTCCGTGGCGAAGACCGACGCGATGTCGGTGGCCGAGGACCGTTCCGGCTC
CGGCGGCATCGAGGTGGGNATCGCTCTGTCGCCGGCGCGCATGGAGCGGTTCCGGAGGTGGCTCGCCGACGCCATCGCCC
TGCTCTCCTCGTCTTCCCACTGCAACTAGCTAGNGTGGAATCTGCAAAAATAATTAAGTATTTTGCTTGAATTCTAGAAC
TTTGAATTTATTACCCTAAAAAATCTAATCCTTTGAATCTTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53597.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis