Browse Element(s) Details


OsAffx.9410.1.S1_x_at

Description gb:NM_191423.1
DB_XREF= gi:34909929
GEN=P0665A11.25
TID=OsAffx.9410.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0665A11.25 (P0665A11.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g564804/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56420Os.42024.1.S1_at11/111+32850176..32851015Ctr copper transporter family protein, expressed
LOC_Os01g56430Os.30148.1.S1_at11/111+32853138..32853771Ctr copper transporter family protein, expressed
LOC_Os01g56440OsAffx.11622.1.S1_at7/111+32854639..32854869NA
LOC_Os01g56450Os.26282.1.S1_at11/111+32861705..32862760expressed protein
LOC_Os01g56460Os.23696.1.S1_at10/111+32865755..32868465Mitochondrial glycoprotein, expressed
LOC_Os01g56470Os.32071.1.S1_at11/111+32870152..32872039Mal d 1-associated protein, putative, expressed
LOC_Os01g56470Os.32071.2.S1_x_at10/111+32870152..32872039Mal d 1-associated protein, putative, expressed
LOC_Os01g56480Os.51237.1.S1_at11/111+32873958..32874554expressed protein
LOC_Os01g56480Os.51237.1.S1_x_at11/111+32873958..32874554expressed protein
LOC_Os01g56480OsAffx.9410.1.S1_x_at4/111+32873958..32874554expressed protein
LOC_Os01g56490Os.2185.1.S1_at11/111+32879763..32896419Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g56490Os.9363.2.S1_x_at1/111+32879763..32896419Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9410.1.S1_x_at--961--3291Chr01:32874553..32874577 (25 bp)
CAAATTTCTCACCAGTCTACTTCAC
NONE
OsAffx.9410.1.S1_x_at--641--8351Chr01:32874459..32874483 (25 bp)
GGCGGCGCGCGATAGGAGCTACGAA
LOC_Os01g56480
OsAffx.9410.1.S1_x_at--673--7531Chr01:32874411..32874435 (25 bp)
GTGGCGGCACGCAGAGAGGACTTCG
LOC_Os01g56480
OsAffx.9410.1.S1_x_at--722--6191Chr01:32874186..32874210 (25 bp)
GAGGCAGCACGTAGTGGGAACTTTA
LOC_Os01g56480
OsAffx.9410.1.S1_x_at--1031--3271Chr01:32874179..32874203 (25 bp)
CACGTAGTGGGAACTTTAGCGGCGA
LOC_Os01g56480
OsAffx.9410.1.S1_x_at--772--2571NONE
AACGGCAACACGCTTACGTCTGAAA
NONE
OsAffx.9410.1.S1_x_at--246--5151NONE
GCAACACGCTTACGTCTGAAACCAG
NONE
OsAffx.9410.1.S1_x_at--954--4891Chr01:32872860..32872884 (25 bp)
GCTTACGTCTGAAACCAGACTTTCA
NONE
OsAffx.9410.1.S1_x_at--202--2631Chr01:32872848..32872872 (25 bp)
AACCAGACTTTCAAATGAACGGAGG
NONE
OsAffx.9410.1.S1_x_at--1131--1911Chr01:32872830..32872854 (25 bp)
ACGGAGGAGAAATCTTCTGTTTCGA
NONE
OsAffx.9410.1.S1_x_at--957--431Chr01:32872819..32872843 (25 bp)
ATCTTCTGTTTCGAATTATTGGCAT
NONE
Target Sequence 
CAAATTTCTCACCAGTCTACTTCACCCCAGCCGGCCGGGCCTTCTCGGCGGCGCGCGTGGGGGCTACAGAGGCGCTGCGC
GGCGGGGCTGTGGCGGCGGCGCGCGATAGGAGCTACGAAGGCGGCGCTCGGTGGGGGCTGCGGTGGCGGCACGCAGAGAG
GACTTCGGCGGCGGCGGCGGCAGCCGGCAGGAGCTGTGGAGACAGAGATGCGGAGGCGGCACTCGGTGGGGGCTGTGGCG
GCGGCGCGCGGAGTGGTCTTCACCGGCGGCGGCGGCAGCAGGAGCTGCGGAGGCGACGCGCGGAGAAGAGTTCGACGGCG
ATGGTGCGCAGGAGCTGCGGCGGCTACACGCGAGTGCAGCAGCGGCGGAGGCAGCACGTAGTGGGAACTTTAGCGGCGAC
GGCGCACGGAGGGAGCGAAAGCGGCATGTGGGAGCTGCAGCAGCGCGTAGGTGCGGCCACGACGACGCGCAGGTGCGGCC
GCAACGGCAACACGCTTACGTCTGAAACCAGACTTTCAAATGAACGGAGGAGAAATCTTCTGTTTCGAATTATTGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9410.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis