Browse Element(s) Details


Os.23696.1.S1_at

Description gb:AK106478.1
DB_XREF= gi:32991687
TID=Os.23696.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23696 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0665A11.23 (P0665A11.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-C12, full insert sequence.
FL= gb:AK106478.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5646010/11Mitochondrial glycoprotein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56400Os.2175.1.S1_a_at11/111+32840542..32843876ABC transporter family protein, expressed
LOC_Os01g56410OsAffx.25367.1.S1_at1/111+32844555..32848855retrotransposon, putative, centromere-specific
LOC_Os01g56420Os.42024.1.S1_at11/111+32850176..32851015Ctr copper transporter family protein, expressed
LOC_Os01g56430Os.30148.1.S1_at11/111+32853138..32853771Ctr copper transporter family protein, expressed
LOC_Os01g56440OsAffx.11622.1.S1_at7/111+32854639..32854869NA
LOC_Os01g56450Os.26282.1.S1_at11/111+32861705..32862760expressed protein
LOC_Os01g56460Os.23696.1.S1_at10/111+32865755..32868465Mitochondrial glycoprotein, expressed
LOC_Os01g56470Os.32071.1.S1_at11/111+32870152..32872039Mal d 1-associated protein, putative, expressed
LOC_Os01g56470Os.32071.2.S1_x_at10/111+32870152..32872039Mal d 1-associated protein, putative, expressed
LOC_Os01g56480Os.51237.1.S1_at11/111+32873958..32874554expressed protein
LOC_Os01g56480Os.51237.1.S1_x_at11/111+32873958..32874554expressed protein
LOC_Os01g56480OsAffx.9410.1.S1_x_at4/111+32873958..32874554expressed protein
LOC_Os01g56490Os.2185.1.S1_at11/111+32879763..32896419Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g56490Os.9363.2.S1_x_at1/111+32879763..32896419Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005759cellular_componentmitochondrial matrix
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23696.1.S1_at--996--4291Chr01:32866569..32866593 (25 bp)
CCTTTCCTACAAGCTTGGCTGTATG
LOC_Os01g56460
Os.23696.1.S1_at--803--4111Chr01:32866533..32866557 (25 bp)
CGCAATCTCATACGCTGGTTCAAGA
LOC_Os01g56460
Os.23696.1.S1_at--442--8011Chr01:32866195..32866219 (25 bp)
GGAGGCGATACTAGGAATGTTTCTT
LOC_Os01g56460
Os.23696.1.S1_at--486--8211Chr01:32866182..32866206 (25 bp)
GGAATGTTTCTTGCCTGTTTGAGAA
LOC_Os01g56460
Os.23696.1.S1_at--167--6951Chr01:32866052..32866076 (25 bp)
GTAGATCGTCACTGGAGGGCTTGAT
LOC_Os01g56460
Os.23696.1.S1_at--683--6911Chr01:32866025..32866049 (25 bp)
GTAGGATTACTAGCGTGAGTTTTCA
LOC_Os01g56460
Os.23696.1.S1_at--756--91Chr01:32865998..32866022 (25 bp)
ATTCCTGTGATTGGATGCTCTACCA
LOC_Os01g56460
Os.23696.1.S1_at--782--4811Chr01:32865982..32866006 (25 bp)
GCTCTACCATTAGTTGTGCATTACG
LOC_Os01g56460
Os.23696.1.S1_at--130--371Chr01:32865919..32865943 (25 bp)
ATAATCATGGCTATAGGGTTACAAA
LOC_Os01g56460
Os.23696.1.S1_at--53--5311Chr01:32865886..32865910 (25 bp)
GAAGGAGCCGGAAACTATTGGTAAT
LOC_Os01g56460
Os.23696.1.S1_at--291--6311Chr01:32865755..32865779 (25 bp)
GATGAATATGACTCCTTTCGGTTCC
NONE
Target Sequence 
CCTTTCCTACAAGCTTGGCTGTATGTGAAGGATCNCCGCAATCTCATACGCTGGTTCAAGAGTGTGGGTNCACTGATCAG
TGAGCCAAAGTCTGAGTAAGATGTTAATAACATCTTGCTGAAGATCNCATCGGGGAGGCGATACTAGGAATGTTTCTTGC
CTGTTTGAGAAAACCCAGAAGATTTGGAGCTATGCTACAATAAAGCAAATGCGGCNCNCGATATTGCATTAGTGGGGGTT
TCTTCGTTCTGTTTAGTTTAACTAAGCCCCTGGGGAGTAGATCGTCACTGGAGGGCTTGATGTGTAGGATTACTAGCGTG
AGTTTTCANTATTCCTGTGATTGGATGCTCTACCATTAGTTGTGCATTACGNTATAACCATGCNCTTGAACAATTTATGC
ATNCTTCCTATAATCATGGCTATAGGGTTACAAAATTAGCCTGAAGGAGCCGGAAACTATTGGTAATTTTTGTAANAGAG
CNCATCCCCAACTTTTATAGAAAGGCCATCNTTAGATGATTACAACACAATCACTTGGGGAGTTGGGGGTATAGAGAACT
GTACAAGATTACAGATGAATATGACTCCTTTCGGTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23696.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis