Browse Element(s) Details


Os.51237.1.S1_x_at

Description gb:AK062308.1
DB_XREF= gi:32972326
TID=Os.51237.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51237 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-B02, full insert sequence.
FL= gb:AK062308.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5648011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56420Os.42024.1.S1_at11/111+32850176..32851015Ctr copper transporter family protein, expressed
LOC_Os01g56430Os.30148.1.S1_at11/111+32853138..32853771Ctr copper transporter family protein, expressed
LOC_Os01g56440OsAffx.11622.1.S1_at7/111+32854639..32854869NA
LOC_Os01g56450Os.26282.1.S1_at11/111+32861705..32862760expressed protein
LOC_Os01g56460Os.23696.1.S1_at10/111+32865755..32868465Mitochondrial glycoprotein, expressed
LOC_Os01g56470Os.32071.1.S1_at11/111+32870152..32872039Mal d 1-associated protein, putative, expressed
LOC_Os01g56470Os.32071.2.S1_x_at10/111+32870152..32872039Mal d 1-associated protein, putative, expressed
LOC_Os01g56480Os.51237.1.S1_at11/111+32873958..32874554expressed protein
LOC_Os01g56480Os.51237.1.S1_x_at11/111+32873958..32874554expressed protein
LOC_Os01g56480OsAffx.9410.1.S1_x_at4/111+32873958..32874554expressed protein
LOC_Os01g56490Os.2185.1.S1_at11/111+32879763..32896419Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g56490Os.9363.2.S1_x_at1/111+32879763..32896419Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51237.1.S1_x_at--721--6191Chr01:32874186..32874210 (25 bp)
GAGGCAGCACGTAGTGGGAACTTTA
LOC_Os01g56480
Os.51237.1.S1_x_at--1030--3271Chr01:32874179..32874203 (25 bp)
CACGTAGTGGGAACTTTAGCGGCGA
LOC_Os01g56480
Os.51237.1.S1_x_at--1065--5131Chr01:32874073..32874097 (25 bp)
GCAACGGCAACACGGTGAGTATTCT
LOC_Os01g56480
Os.51237.1.S1_x_at--987--7371Chr01:32874059..32874083 (25 bp)
GTGAGTATTCTCACGGCGGCGCGTA
LOC_Os01g56480
Os.51237.1.S1_x_at--188--4711Chr01:32874044..32874068 (25 bp)
GCGGCGCGTAGCAGCTGCGGTAGAT
LOC_Os01g56480
Os.51237.1.S1_x_at--864--1511Chr01:32874017..32874041 (25 bp)
AGCAGCTTGGACTCGAGACACATCT
LOC_Os01g56480
Os.51237.1.S1_x_at--537--3611Chr01:32874012..32874036 (25 bp)
CTTGGACTCGAGACACATCTGGTTA
LOC_Os01g56480
Os.51237.1.S1_x_at--249--5991Chr01:32874003..32874027 (25 bp)
GAGACACATCTGGTTAGCCTCATGG
LOC_Os01g56480
Os.51237.1.S1_x_at--454--2191Chr01:32874000..32874024 (25 bp)
ACACATCTGGTTAGCCTCATGGCGT
LOC_Os01g56480
Os.51237.1.S1_x_at--36--8591Chr01:32873993..32874017 (25 bp)
TGGTTAGCCTCATGGCGTTTGTGTT
LOC_Os01g56480
Os.51237.1.S1_x_at--121--8351Chr01:32873980..32874004 (25 bp)
GGCGTTTGTGTTTTTCTTGGAATAT
LOC_Os01g56480
Target Sequence 
GAGGCAGCACGTAGTGGGAACTTTAGCGGCGACGGCGCACGGAGGGAGCGAAAGCGGCATGTGGGAGCTGCAGCAGCGCG
TAGGTGCGGCCACGACGACGCGCAGGTGCGGCCGCAACGGCAACACGGTGAGTATTCTCACGGCGGCGCGTAGCAGCTGC
GGTAGATTGAGCAGCTTGGACTCGAGACACATCTGGTTAGCCTCATGGCGTTTGTGTTTTTCTTGGAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51237.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis