Browse Element(s) Details


Os.32071.2.S1_x_at

Description gb:NM_191422.1
DB_XREF= gi:34909927
GEN=P0665A11.24
TID=Os.32071.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32071 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0665A11.24 (P0665A11.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0665A11.24 (P0665A11.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5647010/11Mal d 1-associated protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56410OsAffx.25367.1.S1_at1/111+32844555..32848855retrotransposon, putative, centromere-specific
LOC_Os01g56420Os.42024.1.S1_at11/111+32850176..32851015Ctr copper transporter family protein, expressed
LOC_Os01g56430Os.30148.1.S1_at11/111+32853138..32853771Ctr copper transporter family protein, expressed
LOC_Os01g56440OsAffx.11622.1.S1_at7/111+32854639..32854869NA
LOC_Os01g56450Os.26282.1.S1_at11/111+32861705..32862760expressed protein
LOC_Os01g56460Os.23696.1.S1_at10/111+32865755..32868465Mitochondrial glycoprotein, expressed
LOC_Os01g56470Os.32071.1.S1_at11/111+32870152..32872039Mal d 1-associated protein, putative, expressed
LOC_Os01g56470Os.32071.2.S1_x_at10/111+32870152..32872039Mal d 1-associated protein, putative, expressed
LOC_Os01g56480Os.51237.1.S1_at11/111+32873958..32874554expressed protein
LOC_Os01g56480Os.51237.1.S1_x_at11/111+32873958..32874554expressed protein
LOC_Os01g56480OsAffx.9410.1.S1_x_at4/111+32873958..32874554expressed protein
LOC_Os01g56490Os.2185.1.S1_at11/111+32879763..32896419Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g56490Os.9363.2.S1_x_at1/111+32879763..32896419Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32071.2.S1_x_at--3--2871Chr01:32870453..32870477 (25 bp)
AAGTGCGAGAAGACCGAGCAGCTCC
LOC_Os01g56470
Os.32071.2.S1_x_at--222--3831NONE
CTGCGTCGGCAGTGACATAGAAGCT
NONE
Os.32071.2.S1_x_at--1123--1431Chr01:32871554..32871578 (25 bp)
AGAAGCTCTTGAGAAAGGCCTTTTC
LOC_Os01g56470
Os.32071.2.S1_x_at--717--871Chr01:32871569..32871593 (25 bp)
AGGCCTTTTCGGGAGCATTGGTAGC
LOC_Os01g56470
Os.32071.2.S1_x_at--371--5931Chr01:32871581..32871605 (25 bp)
GAGCATTGGTAGCTTTCTGGATGAT
LOC_Os01g56470
Os.32071.2.S1_x_at--390--10531Chr01:32871627..32871651 (25 bp)
TTCTTGAAGTCTTTTGGTGTCCCTT
LOC_Os01g56470
Os.32071.2.S1_x_at--845--10851Chr01:32871640..32871664 (25 bp)
TTGGTGTCCCTTCCATCAATGAAAG
LOC_Os01g56470
Os.32071.2.S1_x_at--1042--7211Chr01:32871668..32871692 (25 bp)
GTCGAGCTCATTTGATGGACAACCT
LOC_Os01g56470
Os.32071.2.S1_x_at--321--8531Chr01:32871683..32871707 (25 bp)
TGGACAACCTACAGGCAGGCACATT
LOC_Os01g56470
Os.32071.2.S1_x_at--891--6171Chr01:32871735..32871759 (25 bp)
GAGGAAGGTACTGCAAAGGACACTA
LOC_Os01g56470
Os.32071.2.S1_x_at--127--8071Chr01:32871752..32871776 (25 bp)
GGACACTAAACAGAACGACTACGCA
LOC_Os01g56470
Target Sequence 
AAGTGCGAGAAGACCGAGCAGCTCCTCCGCGACTGCGTCGGCAGTGACATAGAAGCTCTTGAGAAAGGCCTTTTCGGGAG
CATTGGTAGCTTTCTGGATGATGCTGAGAGGATGACCAATGATTTCTTGAAGTCTTTTGGTGTCCCTTCCATCAATGAAA
GGGAGTCGAGCTCATTTGATGGACAACCTACAGGCAGGCACATTGGTGGACAACCTGCAGGCAGGCACATTGAGGAAGGT
ACTGCAAAGGACACTAAACAGAACGACTACGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32071.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis