Browse Element(s) Details


OsAffx.1626.1.S1_at

Description gb:NM_184876.1
DB_XREF= gi:34896841
GEN=OSJNBa0003G23.14
TID=OsAffx.1626.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative ankyrin repeat-containing protein (OSJNBa0003G23.14), mRNA.
PROD=putative ankyrin repeat-containing protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4770211/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g476702/11TPR Domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47670OsAffx.10442.1.S1_s_at10/113+26949908..26955138TPR Domain containing protein
LOC_Os03g47670OsAffx.10442.1.S1_at9/113+26949908..26955138TPR Domain containing protein
LOC_Os03g47670OsAffx.10442.2.S1_at9/113+26949908..26955138TPR Domain containing protein
LOC_Os03g47670OsAffx.1626.1.S1_at2/113+26949908..26955138TPR Domain containing protein
LOC_Os03g47686OsAffx.22673.2.S1_x_at11/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.22673.2.S1_at11/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.22673.1.S1_at9/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.2557.1.S1_x_at2/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.10442.1.S1_s_at2/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47702OsAffx.1626.1.S1_at11/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.28851.1.S1_at11/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.10442.2.S1_at4/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.10442.1.S1_s_at2/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.20341.2.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.22674.1.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.24556.1.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.22673.2.S1_x_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.9154.1.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47720OsAffx.22674.1.S1_at11/113+26993285..26999248TPR Domain containing protein
LOC_Os03g47720Os.5139.2.S1_x_at2/113+26993285..26999248TPR Domain containing protein
LOC_Os03g47720Os.5139.2.S1_at1/113+26993285..26999248TPR Domain containing protein
LOC_Os03g47730OsAffx.13395.1.S1_x_at11/113+27000580..27002608Associated with HOX family protein
LOC_Os03g47740Os.7976.1.S1_a_at11/113+27006206..27012857Associated with HOX family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1626.1.S1_at--916--6291Chr03:26981382..26981406 (25 bp)
GATGAGACGGGCTCTGTTGCTCTTC
LOC_Os03g47702
OsAffx.1626.1.S1_at--1079--8591Chr03:26981423..26981652 (25 bp)
TGGTCTTTCTCTTCACTTTGTTGTA
LOC_Os03g47702
OsAffx.1626.1.S1_at--818--6631Chr03:26981647..26981671 (25 bp)
GTTGTAGCCACATGGCGGGCAATCT
LOC_Os03g47702
OsAffx.1626.1.S1_at--367--3192Chr03:26981666..26981690 (25 bp)
CAATCTACAAACCATCCTGCTATTT
LOC_Os03g47702
OsAffx.1626.1.S1_at--147--4872Chr03:26981684..26981708 (25 bp)
GCTATTTGAAGTATTCCTGCCTAAA
LOC_Os03g47702
OsAffx.1626.1.S1_at--1088--2711Chr03:26982006..26982030 (25 bp)
AAGCAGGTTATGACAGTGCCTTTTT
LOC_Os03g47702
OsAffx.1626.1.S1_at--821--2811Chr03:26982057..26982081 (25 bp)
AAGTAGTCCGTCTCTTGTTATCCAG
LOC_Os03g47702
OsAffx.1626.1.S1_at--1118--6871Chr03:26982096..26982120 (25 bp)
GTATAGTTGTTGCTCATGGGACACC
LOC_Os03g47702
OsAffx.1626.1.S1_at--379--6451Chr03:26982173..26982408 (25 bp)
GATCACCATGTAGATTGTTTCCAAG
LOC_Os03g47702
OsAffx.1626.1.S1_at--745--4471Chr03:26982408..26982432 (25 bp)
GCACTGGGTAACGTATTAGTCCTAA
LOC_Os03g47702
OsAffx.1626.1.S1_at--551--4811Chr03:26982649..26982673 (25 bp)
GCTCTCCGTTCTGCTAAACATGGAT
LOC_Os03g47702
Target Sequence 
GATGAGACGGGCTCTGTTGCTCTTCATTTTGCTGCGAAAAATGGTCTTTCTCTTCACTTTGTTGTAGCCACATGGCGGGC
AATCTACAAACCATCCTGCTATTTGAAGTATTCCTGCCTAAAATATCACTTACCATTTCTTTTTCTCGAACAAGCAGGTT
ATGACAGTGCCTTTTTTTTTTCATTTTGTTTAGGGTATGAAGAAGTAGTCCGTCTCTTGTTATCCAGTGGAGCTAGGACT
GGTATAGTTGTTGCTCATGGGACACCACTACATATTGCTGTTTTCTATAGGAGGATTGGTGTCGTCAAGATTTTATTGGA
TCACCATGTAGATTGTTTCCAAGCACTGGGTAACGTATTAGTCCTAAACAGTTTAATTTTAACAACTACATACAAGATTG
TTGCAAACACATGGAAATGCAGAGAAATATATGGTCAAACAACACTTCAGGAGTTTGGGGTACCCCTATTCTTACGGCTC
TCCGTTCTGCTAAACATGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1626.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis