Browse Element(s) Details


Os.28851.1.S1_at

Description gb:AK110985.1
DB_XREF= gi:32996194
TID=Os.28851.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28851 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0003G23.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-D03, full insert sequence.
FL= gb:AK110985.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4770211/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47670OsAffx.10442.1.S1_s_at10/113+26949908..26955138TPR Domain containing protein
LOC_Os03g47670OsAffx.10442.1.S1_at9/113+26949908..26955138TPR Domain containing protein
LOC_Os03g47670OsAffx.10442.2.S1_at9/113+26949908..26955138TPR Domain containing protein
LOC_Os03g47670OsAffx.1626.1.S1_at2/113+26949908..26955138TPR Domain containing protein
LOC_Os03g47686OsAffx.22673.2.S1_x_at11/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.22673.2.S1_at11/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.22673.1.S1_at9/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.2557.1.S1_x_at2/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.10442.1.S1_s_at2/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47702OsAffx.1626.1.S1_at11/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.28851.1.S1_at11/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.10442.2.S1_at4/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.10442.1.S1_s_at2/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.20341.2.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.22674.1.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.24556.1.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.22673.2.S1_x_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.9154.1.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47720OsAffx.22674.1.S1_at11/113+26993285..26999248TPR Domain containing protein
LOC_Os03g47720Os.5139.2.S1_x_at2/113+26993285..26999248TPR Domain containing protein
LOC_Os03g47720Os.5139.2.S1_at1/113+26993285..26999248TPR Domain containing protein
LOC_Os03g47730OsAffx.13395.1.S1_x_at11/113+27000580..27002608Associated with HOX family protein
LOC_Os03g47740Os.7976.1.S1_a_at11/113+27006206..27012857Associated with HOX family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28851.1.S1_at--731--5571Chr03:26976415..26976439 (25 bp)
GAAAGGACTACCGTGGTGCCTCAAA
LOC_Os03g47702
Os.28851.1.S1_at--879--7491Chr03:26976427..26976451 (25 bp)
GTGGTGCCTCAAATTTCTACAGTCA
LOC_Os03g47702
Os.28851.1.S1_at--1081--4291Chr03:26977233..26977257 (25 bp)
CCTACTGATGCAACACTCTATTCGA
LOC_Os03g47702
Os.28851.1.S1_at--546--611Chr03:26977487..26977511 (25 bp)
ATGCGATGCTTTCATGGCTGGACTG
LOC_Os03g47702
Os.28851.1.S1_at--645--1431Chr03:26977741..26977765 (25 bp)
AGAACTTCAAGCCATCCGATTAGAT
LOC_Os03g47702
Os.28851.1.S1_at--618--2832Chr03:26977766..26977790 (25 bp)
AAGTTTAGGCTTTGGCTGCACGTTT
LOC_Os03g47702
Os.28851.1.S1_at--293--2431Chr03:26977810..26977834 (25 bp)
AAAACGGTCGTAATGCTCTGAGCTG
LOC_Os03g47702
Os.28851.1.S1_at--1129--1171Chr03:26977855..26977879 (25 bp)
AGTACCTCGTACACCTTTTGGATCA
LOC_Os03g47702
Os.28851.1.S1_at--938--231Chr03:26977881..26977905 (25 bp)
ATAGCTGGTCGTGCGTAGTACCACT
LOC_Os03g47702
Os.28851.1.S1_at--949--10031Chr03:26977896..26977920 (25 bp)
TAGTACCACTTAGGCCTACCATGTT
LOC_Os03g47702
Os.28851.1.S1_at--645--1351Chr03:26977924..26977948 (25 bp)
AGAGATGCTTTCCTCGGTGTTTCAT
LOC_Os03g47702
Target Sequence 
GAAAGGACTACCGTGGTGCCTCAAATTTCTACAGTCAGGCAATTGAGATGGATCCTACTGATGCAACACTCTATTCGAAT
AGGAGCCTTTGCCATCTTCAAATGACCGAAGCGGAGGCAGCTTTGTTTGATGCTGAGTTTTGCATACAATTGCGGCCTGA
ATGGATAAAAGGTTATTACAGGAAAGGAGCTGCTCTCATGTTGCTGAAGAAGCACGAAAAGGCATGCGATGCTTTCATGG
CTGGACTGAAGCTGGAACCTGGAAATGCTGAGATGGAGAAAGCATTACGGGAGGCGATTGAGGCGATGAAGAAGCATCAT
GTCGCTACAAAGAACTTCAAGCCATCCGATTAGATAAGTTTAGGCTTTGGCTGCACGTTTTGTGTAACATATTGTGCAGA
AAACGGTCGTAATGCTCTGAGCTGGAGCGCTATAATGTATTACCAGTACCTCGTACACCTTTTGGATCACATAGCTGGTC
GTGCGTAGTACCACTTAGGCCTACCATGTTTGGAGAGATGCTTTCCTCGGTGTTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28851.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis