Browse Element(s) Details


OsAffx.22672.1.S1_at

Description tigr:9631.m04636
TID=OsAffx.22672.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative ankyrin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4765010/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47620Os.45041.1.S1_x_at11/113+26911878..26919392TPR Domain containing protein
LOC_Os03g47629NANA3+26920979..26921203hypothetical protein
LOC_Os03g47640Os.50633.1.S1_at10/113+26927777..26935249hypothetical protein
LOC_Os03g47640Os.45041.1.S1_x_at5/113+26927777..26935249hypothetical protein
LOC_Os03g47650OsAffx.22672.1.S1_at10/113+26937495..26944710TPR Domain containing protein, expressed
LOC_Os03g47670OsAffx.10442.1.S1_s_at10/113+26949908..26955138TPR Domain containing protein
LOC_Os03g47670OsAffx.10442.1.S1_at9/113+26949908..26955138TPR Domain containing protein
LOC_Os03g47670OsAffx.10442.2.S1_at9/113+26949908..26955138TPR Domain containing protein
LOC_Os03g47670OsAffx.1626.1.S1_at2/113+26949908..26955138TPR Domain containing protein
LOC_Os03g47686OsAffx.22673.2.S1_x_at11/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.22673.2.S1_at11/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.22673.1.S1_at9/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.2557.1.S1_x_at2/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.10442.1.S1_s_at2/113+26959921..26969996TPR Domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22672.1.S1_at--620--5631Chr03:26941787..26941811 (25 bp)
GACACCAATAGAAATAGCCGCGAAG
LOC_Os03g47650
OsAffx.22672.1.S1_at--794--1251Chr03:26941834..26941858 (25 bp)
AGATTCTATTTCCTTGCACGTTGCC
LOC_Os03g47650
OsAffx.22672.1.S1_at--207--10751Chr03:26941885..26941909 (25 bp)
TTGAAGGAATCATCACCCATGTGAA
LOC_Os03g47650
OsAffx.22672.1.S1_at--1158--2331Chr03:26941929..26942304 (25 bp)
AAAGCATGCGCTCAGGATAAGGAAA
LOC_Os03g47650
OsAffx.22672.1.S1_at--507--8611Chr03:26942372..26942396 (25 bp)
TGGTGCATCCAAATTCTACAGTGAG
LOC_Os03g47650
OsAffx.22672.1.S1_at--332--9871NONE
TACAGTGAGGCCATCCAGCTGGATC
NONE
OsAffx.22672.1.S1_at--944--1611Chr03:26943736..26943760 (25 bp)
AGCTGGATCCTACCGATGCAACATT
LOC_Os03g47650
OsAffx.22672.1.S1_at--1042--5091Chr03:26943801..26943825 (25 bp)
GCACGGGAAGCTTTGGTTGATGCTA
LOC_Os03g47650
OsAffx.22672.1.S1_at--168--5691Chr03:26943827..26943851 (25 bp)
GACTTGCATAGGACTGAAACCAGAT
LOC_Os03g47650
OsAffx.22672.1.S1_at--335--6771Chr03:26943862..26943886 (25 bp)
GTTACTATCGGAAAGGAGCTGCCCT
LOC_Os03g47650
OsAffx.22672.1.S1_at--22--1611Chr03:26943878..26943900 (23 bp)
AGCTGCCCTGATGTCGCTCAAGGAA
LOC_Os03g47650
Target Sequence 
GACACCAATAGAAATAGCCGCGAAGTCTGGAAGAAGGAAGCTTGTGGAGATTCTATTTCCTTGCACGTTGCCAATTAAAG
GTGTGTCAAACTGGACTGTTGAAGGAATCATCACCCATGTGAAATCAAAAAAATCAAAGAAGAAAGCATGCGCTCAGGAT
AAGGAAAGTGGTACAGACAAAAAGGCTCAGTTGAAATCATTGGGTGCAAGTGCAGTTCAGGGGAAGGACTATGTTGGTGC
ATCCAAATTCTACAGTGAGGCCATCCAGCTGGATCCTACCGATGCAACATTGCATTCAAATAGGAGCTTTTGCTACCTAA
AAAGTGGTGAAGCACGGGAAGCTTTGGTTGATGCTAAGACTTGCATAGGACTGAAACCAGATTGGCCAAAAGGTTACTAT
CGGAAAGGAGCTGCCCTGATGTCGCTCAAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22672.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis