Browse Element(s) Details


OsAffx.32306.1.S1_x_at

Description gb:BA000029.2
DB_XREF= gi:47118326
GEN=atp1
TID=OsAffx.32306.1
CNT=1
FEA=DNA_48
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ATP synthase F0 subunit 1 (Oryza sativa (japonica cultivar-group)) mitochondrion
PROD=ATP synthase F0 subunit 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g089107/11ATP synthase alpha chain, mitochondrial, putative, expressed
LOC_Os04g177004/11kinesin heavy chain isolog, putative, expressed
LOC_Os04g244101/11kinesin heavy chain isolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08890OsAffx.32305.1.S1_x_at11/119+4703612..4706429Mitochondrial 60S ribosomal protein L5, putative
LOC_Os09g08890OsAffx.29772.1.S1_at10/119+4703612..4706429Mitochondrial 60S ribosomal protein L5, putative
LOC_Os09g08890OsAffx.32304.1.S1_at2/119+4703612..4706429Mitochondrial 60S ribosomal protein L5, putative
LOC_Os09g08900Os.27691.1.S1_x_at1/119+4714030..4719783retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08900Os.27691.2.S1_x_at1/119+4714030..4719783retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08910OsAffx.26050.4.S1_at11/119+4727302..4729884ATP synthase alpha chain, mitochondrial, putative, expressed
LOC_Os09g08910OsAffx.32306.1.S1_x_at7/119+4727302..4729884ATP synthase alpha chain, mitochondrial, putative, expressed
LOC_Os09g08920NANA9+4736258..4736839Cytochrome P450 76C1, putative
LOC_Os09g08930OsAffx.10637.1.S1_s_at11/119+4747016..4750384transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g08930OsAffx.10637.3.S1_s_at11/119+4747016..4750384transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g08930OsAffx.10637.4.S1_s_at8/119+4747016..4750384transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g08940OsAffx.32056.1.S1_at11/119+4752271..4756768transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g08940OsAffx.32056.1.S1_x_at10/119+4752271..4756768transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g08940OsAffx.30536.1.S1_x_at1/119+4752271..4756768transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0046933molecular_functionhydrogen-transporting ATP synthase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32306.1.S1_x_at--310--10751Chr09:4728342..4728366 (25 bp)
TTGACTGCGTTACCCGTGATTGAAA
LOC_Os09g08910
OsAffx.32306.1.S1_x_at--1114--2671NONE
AAGCTGGAGACGTATCGGCCTATAT
NONE
OsAffx.32306.1.S1_x_at--1158--2393Chr09:4728439..4728463 (25 bp)
AAACAGAGCTCTTTTATCGCGGAAT
LOC_Os09g08910
OsAffx.32306.1.S1_x_at--1083--9472Chr09:4728463..4728487 (25 bp)
TTAGACCTGCTATTAACGTTGGCTT
LOC_Os09g08910
OsAffx.32306.1.S1_x_at--968--9752Chr09:4728476..4728500 (25 bp)
TAACGTTGGCTTATCCGTCAGTCGC
LOC_Os09g08910
OsAffx.32306.1.S1_x_at--694--7812Chr09:4728505..4728529 (25 bp)
GGTCTGCCGCTCAGTTGAAAGCTAT
LOC_Os09g08910
OsAffx.32306.1.S1_x_at--681--4211Chr02:22132923..22132947 (25 bp)
CCGCCTTCGCTCAATTTGGGTCAGA
NONE
OsAffx.32306.1.S1_x_at--709--10831NONE
TTGGGTCAGACCTTGATGCTGCGAC
NONE
OsAffx.32306.1.S1_x_at--652--9111Chr05:25181178..25181202 (25 bp)
TGCTGCGACTCAGGCATTACTCAAT
NONE
OsAffx.32306.1.S1_x_at--594--6531Chr09:4728713..4728737 (25 bp)
GATTTATGCTGCTGTCAACGGCTTC
LOC_Os09g08910
OsAffx.32306.1.S1_x_at--856--2572Chr09:4728729..4728753 (25 bp)
AACGGCTTCTGTGATCGAATGCCAC
LOC_Os09g08910
Target Sequence 
TTGACTGCGTTACCCGTGATTGAAACACAAGCTGGAGACGTATCGGCCTATATCCCCACCAATGTGATCTCCATTACAGA
TGGACAAATCTGTTTGGAAACAGAGCTCTTTTATCGCGGAATTAGACCTGCTATTAACGTTGGCTTATCCGTCAGTCGCG
TCGGGTCTGCCGCTCAGTTGAAAGCTATGAAACAAGTCTGCGGTAGTTCAAAACTGGAATTGGCACAATATCGCGAAGTG
GCCGCCTTCGCTCAATTTGGGTCAGACCTTGATGCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTTACAGAAGT
GCCCAAACAACCACAATATGAACCACTTCCAATTGAAAAACAAATTGTTGTGATTTATGCTGCTGTCAACGGCTTCTGTG
ATCGAATGCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32306.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis