Browse Element(s) Details


OsAffx.32304.1.S1_at

Description gb:BA000029.2
DB_XREF= gi:47118326
GEN=cox1
TID=OsAffx.32304.1
CNT=1
FEA=DNA_46
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome c oxidase subunit1 (Oryza sativa (japonica cultivar-group)) mitochondrion
PROD=Cytochrome c oxidase subunit1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g088902/11Mitochondrial 60S ribosomal protein L5, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08860NANA9+4680329..4683252retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08870NANA9+4683578..4689688retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08880OsAffx.30475.3.S1_s_at5/119+4691153..4692007ATP synthase alpha chain, putative
LOC_Os09g08890OsAffx.32305.1.S1_x_at11/119+4703612..4706429Mitochondrial 60S ribosomal protein L5, putative
LOC_Os09g08890OsAffx.29772.1.S1_at10/119+4703612..4706429Mitochondrial 60S ribosomal protein L5, putative
LOC_Os09g08890OsAffx.32304.1.S1_at2/119+4703612..4706429Mitochondrial 60S ribosomal protein L5, putative
LOC_Os09g08900Os.27691.1.S1_x_at1/119+4714030..4719783retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08900Os.27691.2.S1_x_at1/119+4714030..4719783retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08910OsAffx.26050.4.S1_at11/119+4727302..4729884ATP synthase alpha chain, mitochondrial, putative, expressed
LOC_Os09g08910OsAffx.32306.1.S1_x_at7/119+4727302..4729884ATP synthase alpha chain, mitochondrial, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005762cellular_componentmitochondrial large ribosomal subunit
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32304.1.S1_at--769--7673Chr12:20434629..20434653 (25 bp)
GGGTTAATCTGACCTTCTTTCCCAT
NONE
OsAffx.32304.1.S1_at--428--3533Chr12:20434651..20434675 (25 bp)
CATGCATTTCTTAGGGCTTTCGGGC
NONE
OsAffx.32304.1.S1_at--838--3332Chr12:20434680..20434704 (25 bp)
CACGTCGCATTCCAGATTATCCAGA
NONE
OsAffx.32304.1.S1_at--421--6553Chr12:20434694..20434718 (25 bp)
GATTATCCAGATGCTTACGCCGGAT
NONE
OsAffx.32304.1.S1_at--436--4812Chr12:20434724..20434748 (25 bp)
GCTCTGAGCAGTTTCGGTTCTTATA
NONE
OsAffx.32304.1.S1_at--706--4012Chr12:20434766..20434790 (25 bp)
CGTCGTTTCTTCGTAGTTGTCGCAA
NONE
OsAffx.32304.1.S1_at--137--1252Chr12:20434780..20434804 (25 bp)
AGTTGTCGCAATCACTTCAAGCAGT
NONE
OsAffx.32304.1.S1_at--116--2971Chr12:20434866..20434890 (25 bp)
AATGGTTGGTACAAAGCCCTCCAGC
NONE
OsAffx.32304.1.S1_at--316--3293Chr12:13379310..13379334 (25 bp)
CAAACGTAGATTGCTCGCGGCTAAA
NONE
OsAffx.32304.1.S1_at--1015--6672Chr12:4676646..4676670 (25 bp)
GTTCCGTAGTTGAGTTCTTTCGCAT
NONE
OsAffx.32304.1.S1_at--273--4952Chr12:4676667..4676691 (25 bp)
GCATTTCTCGTATCGTTTTTCGTGG
NONE
Target Sequence 
GGGTTAATCTGACCTTCTTTCCCATGCATTTCTTAGGGCTTTCGGGCATGCCACGTCGCATTCCAGATTATCCAGATGCT
TACGCCGGATGGAATGCTCTGAGCAGTTTCGGTTCTTATATATCCGTAGTTGGGATTCGTCGTTTCTTCGTAGTTGTCGC
AATCACTTCAAGCAGTGGAAAGAACAAAAGATGTGCGGAAAGTCCTTGGGCTGTTGAACAGAATCCAACCACACTAGAAT
GGTTGGTACAAAGCCCTCCAGCCTTTCATACTTTTGGAGAACTTCCAGCTATCAAAGAGACAAAAAGCTAGATGTCGGAG
AAGCGAAATATACGAGATCACAAACGTAGATTGCTCGCGGCTAAATATGAATTGAGACGAAAGCTTTAGAATTTTTTAAC
CCGATCTTCCGCGGGATCGTTATAAGTTGTCCAAGTTGCCAAGAAAGAGTTCAATGGCACGAGTCAGAAATCGAGGTATT
TTCACGGGTCGCCCTCGTTCCGTAGTTGAGTTCTTTCGCATTTCTCGTATCGTTTTTCGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32304.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis