Browse Element(s) Details


OsAffx.26050.4.S1_at

Description gb:AK106446.1
DB_XREF= gi:32991655
TID=OsAffx.26050.4
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-E03, full insert sequence.
FL= gb:AK106446.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0891011/11ATP synthase alpha chain, mitochondrial, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08890OsAffx.32305.1.S1_x_at11/119+4703612..4706429Mitochondrial 60S ribosomal protein L5, putative
LOC_Os09g08890OsAffx.29772.1.S1_at10/119+4703612..4706429Mitochondrial 60S ribosomal protein L5, putative
LOC_Os09g08890OsAffx.32304.1.S1_at2/119+4703612..4706429Mitochondrial 60S ribosomal protein L5, putative
LOC_Os09g08900Os.27691.1.S1_x_at1/119+4714030..4719783retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08900Os.27691.2.S1_x_at1/119+4714030..4719783retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08910OsAffx.26050.4.S1_at11/119+4727302..4729884ATP synthase alpha chain, mitochondrial, putative, expressed
LOC_Os09g08910OsAffx.32306.1.S1_x_at7/119+4727302..4729884ATP synthase alpha chain, mitochondrial, putative, expressed
LOC_Os09g08920NANA9+4736258..4736839Cytochrome P450 76C1, putative
LOC_Os09g08930OsAffx.10637.1.S1_s_at11/119+4747016..4750384transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g08930OsAffx.10637.3.S1_s_at11/119+4747016..4750384transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g08930OsAffx.10637.4.S1_s_at8/119+4747016..4750384transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g08940OsAffx.32056.1.S1_at11/119+4752271..4756768transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g08940OsAffx.32056.1.S1_x_at10/119+4752271..4756768transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g08940OsAffx.30536.1.S1_x_at1/119+4752271..4756768transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0046933molecular_functionhydrogen-transporting ATP synthase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26050.4.S1_at--579--9432Chr09:4729386..4729410 (25 bp)
TCGGTGCAGCCCTTTCTTCTATTCC
LOC_Os09g08910
OsAffx.26050.4.S1_at--490--9571Chr09:4729400..4729424 (25 bp)
TCTTCTATTCCGGAGTGCATAAACA
LOC_Os09g08910
OsAffx.26050.4.S1_at--803--6111Chr09:4729412..4729436 (25 bp)
GAGTGCATAAACAAGGATCCTCAAA
LOC_Os09g08910
OsAffx.26050.4.S1_at--546--3072Chr09:4729443..4729467 (25 bp)
AATCATTTCGTTAATGGCATTTCAG
LOC_Os09g08910
OsAffx.26050.4.S1_at--798--1412Chr09:4729466..4729490 (25 bp)
AGAAATGAGTCATAGGCGCCTGTAC
LOC_Os09g08910
OsAffx.26050.4.S1_at--639--272Chr09:4729477..4729501 (25 bp)
ATAGGCGCCTGTACAATGACAGAAT
LOC_Os09g08910
OsAffx.26050.4.S1_at--1083--111Chr09:4729530..4729554 (25 bp)
ATTCTATTCAAATCTCACAAGTTCT
LOC_Os09g08910
OsAffx.26050.4.S1_at--702--451Chr09:4729541..4729565 (25 bp)
ATCTCACAAGTTCTCTTTACGCGTC
LOC_Os09g08910
OsAffx.26050.4.S1_at--428--2831Chr09:4729548..4729572 (25 bp)
AAGTTCTCTTTACGCGTCTTCTAGG
LOC_Os09g08910
OsAffx.26050.4.S1_at--240--7591Chr09:4729572..4729596 (25 bp)
GGGCATTGTTGAACGCAATCTGCAG
LOC_Os09g08910
OsAffx.26050.4.S1_at--938--2591Chr09:4729583..4729607 (25 bp)
AACGCAATCTGCAGGAACAAGAAAT
LOC_Os09g08910
Target Sequence 
TCGGTGCAGCCCTTTCTTCTATTCCGGAGTGCATAAACAAGGATCCTCAAAAAGCGAAATCATTTCGTTAATGGCATTTC
AGAAATGAGTCATAGGCGCCTGTACAATGACAGAATAGAGAGTCCTTTTTTTCCAGAATGAATCATTCTATTCAAATCTC
ACAAGTTCTCTTTACGCGTCTTCTAGGGGCATTGTTGAACGCAATCTGCAGGAACAAGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26050.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis