Browse Element(s) Details


Os.48521.1.S1_at

Description gb:AK063304.1
DB_XREF= gi:32973322
TID=Os.48521.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48521 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-F06, full insert sequence.
FL= gb:AK063304.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g244308/11Sucrose synthase 2, putative, expressed
LOC_Os04g176507/11Sucrose synthase 2, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24390NANA4+13959475..13962175retrotransposon protein, putative, unclassified
LOC_Os04g24400NANA4+13962813..13963322retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g24410Os.35543.1.S1_at11/114+13964448..13972873kinesin heavy chain isolog, putative, expressed
LOC_Os04g24410OsAffx.26050.3.A1_at11/114+13964448..13972873kinesin heavy chain isolog, putative, expressed
LOC_Os04g24410OsAffx.32229.1.S1_x_at9/114+13964448..13972873kinesin heavy chain isolog, putative, expressed
LOC_Os04g24410OsAffx.28576.1.S1_s_at4/114+13964448..13972873kinesin heavy chain isolog, putative, expressed
LOC_Os04g24410OsAffx.32306.1.S1_x_at1/114+13964448..13972873kinesin heavy chain isolog, putative, expressed
LOC_Os04g24414Os.38273.2.S1_at11/114+13979041..13981278expressed protein
LOC_Os04g24414Os.15576.1.S1_at11/114+13979041..13981278expressed protein
LOC_Os04g24414Os.38273.2.S1_x_at11/114+13979041..13981278expressed protein
LOC_Os04g24420Os.38273.1.S1_at11/114+13980253..13981553expressed protein
LOC_Os04g24430Os.48521.1.S1_at8/114+13983603..13988518Sucrose synthase 2, putative, expressed
LOC_Os04g24430Os.46781.1.S1_at2/114+13983603..13988518Sucrose synthase 2, putative, expressed
LOC_Os04g24440NANA4+13990348..13993368retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g24450OsAffx.31892.5.S1_at2/114+13994825..13999644retrotransposon, putative, centromere-specific
LOC_Os04g24450OsAffx.24431.1.S1_at2/114+13994825..13999644retrotransposon, putative, centromere-specific
LOC_Os04g24450OsAffx.31892.5.S1_x_at2/114+13994825..13999644retrotransposon, putative, centromere-specific
LOC_Os04g24460OsAffx.26128.1.S1_at11/114+14003269..14004470phytase, putative
LOC_Os04g24460OsAffx.28544.2.S1_x_at1/114+14003269..14004470phytase, putative

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Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
GO:0005986biological_processsucrose biosynthesis
GO:0009409biological_processresponse to cold
GO:0009413biological_processresponse to flooding
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016157molecular_functionsucrose synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48521.1.S1_at--325--5512Chr04:13987743..13987767 (25 bp)
GAACAAGGTGTCCACTGCTGGGCTT
LOC_Os04g24430
Os.48521.1.S1_at--608--1631Chr04:13987769..13987913 (25 bp)
AGCGGATCTGCGAGTGCTACACATG
LOC_Os04g24430
Os.48521.1.S1_at--275--7672Chr04:13987944..13987968 (25 bp)
GGGATCTACATATTCCTTCTGGAAG
LOC_Os04g24430
Os.48521.1.S1_at--554--3252Chr04:13987999..13988023 (25 bp)
CAACGTTACCTGCAGATATTCTACA
LOC_Os04g24430
Os.48521.1.S1_at--1140--7632Chr04:13988165..13988189 (25 bp)
GGGATCAACAGGCTCGGCAAACCAC
LOC_Os04g24430
Os.48521.1.S1_at--981--7532Chr04:13988197..13988221 (25 bp)
GTGGCGCCTAGTGAGATCGTAGTTA
LOC_Os04g24430
Os.48521.1.S1_at--495--2352Chr04:13988330..13988354 (25 bp)
AAAGCCGCAGACTCGGATGCAAAGG
LOC_Os04g24430
Os.48521.1.S1_at--810--9492Chr04:13988479..13988503 (25 bp)
TCTTAACCAGGTTAGCCGGGCAGAA
LOC_Os04g24430
Os.48521.1.S1_at--79--6092Chr04:13988517..13988541 (25 bp)
GAGTAGAGAGCATCTTCCGACCAAG
NONE
Os.48521.1.S1_at--546--3312Chr04:13988560..13988584 (25 bp)
CACATCGCAGCTCAATTTATTCCAT
NONE
Os.48521.1.S1_at--747--3092Chr04:13988601..13988625 (25 bp)
AATACTAACTACTACTTGCGTGAGA
NONE
Target Sequence 
GAACAAGGTGTCCACTGCTGGGCTTCAGCGGATCTGCGAGTGCTACACATGGAAGATTTATGCAACTAGAGTGCTAAACA
TGGGATCTACATATTCCTTCTGGAAGACACTAAACAAGGAGGAAAGACAAGCCAAACAACGTTACCTGCAGATATTCTAC
AATGTTCAGTATAGGAACCTGGCAAAGGCTATGGCAAGAGCAGGGGATCAACAGGCTCGGCAAACCACAACAGGCGTGGC
GCCTAGTGAGATCGTAGTTAGACCCAAAGAAAGAAAGCCGCAGACTCGGATGCAAAGGATCTTAACCAGGTTAGCCGGGC
AGAAGCCTCCAGTTTCTGAGTAGAGAGCATCTTCCGACCAAGACAACACCGAAACCAGCCCACATCGCAGCTCAATTTAT
TCCATTGATACCGATGTATGAAATACTAACTACTACTTGCGTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48521.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis