Browse Element(s) Details


Os.38273.2.S1_at

Description gb:AK120707.1
DB_XREF= gi:37990330
TID=Os.38273.2
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.38273 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001D08, full insert sequence.
FL= gb:AK120707.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2441411/11expressed protein
LOC_Os04g176803/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24370NANA4+13948063..13955445retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g24380NANA4+13956780..13957436retrotransposon, putative, centromere-specific
LOC_Os04g24390NANA4+13959475..13962175retrotransposon protein, putative, unclassified
LOC_Os04g24400NANA4+13962813..13963322retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g24410Os.35543.1.S1_at11/114+13964448..13972873kinesin heavy chain isolog, putative, expressed
LOC_Os04g24410OsAffx.26050.3.A1_at11/114+13964448..13972873kinesin heavy chain isolog, putative, expressed
LOC_Os04g24410OsAffx.32229.1.S1_x_at9/114+13964448..13972873kinesin heavy chain isolog, putative, expressed
LOC_Os04g24410OsAffx.28576.1.S1_s_at4/114+13964448..13972873kinesin heavy chain isolog, putative, expressed
LOC_Os04g24410OsAffx.32306.1.S1_x_at1/114+13964448..13972873kinesin heavy chain isolog, putative, expressed
LOC_Os04g24414Os.38273.2.S1_at11/114+13979041..13981278expressed protein
LOC_Os04g24414Os.15576.1.S1_at11/114+13979041..13981278expressed protein
LOC_Os04g24414Os.38273.2.S1_x_at11/114+13979041..13981278expressed protein
LOC_Os04g24420Os.38273.1.S1_at11/114+13980253..13981553expressed protein
LOC_Os04g24430Os.48521.1.S1_at8/114+13983603..13988518Sucrose synthase 2, putative, expressed
LOC_Os04g24430Os.46781.1.S1_at2/114+13983603..13988518Sucrose synthase 2, putative, expressed
LOC_Os04g24440NANA4+13990348..13993368retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g24450OsAffx.31892.5.S1_at2/114+13994825..13999644retrotransposon, putative, centromere-specific
LOC_Os04g24450OsAffx.24431.1.S1_at2/114+13994825..13999644retrotransposon, putative, centromere-specific
LOC_Os04g24450OsAffx.31892.5.S1_x_at2/114+13994825..13999644retrotransposon, putative, centromere-specific
LOC_Os04g24460OsAffx.26128.1.S1_at11/114+14003269..14004470phytase, putative
LOC_Os04g24460OsAffx.28544.2.S1_x_at1/114+14003269..14004470phytase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38273.2.S1_at--725--8971Chr04:13979441..13979695 (25 bp)
TGAACTGAACTGTAGCACCTTCTCG
LOC_Os04g24414
Os.38273.2.S1_at--1099--5451Chr04:13979440..13979694 (25 bp)
GAACTGAACTGTAGCACCTTCTCGC
LOC_Os04g24414
Os.38273.2.S1_at--420--1892Chr04:9663870..9664124 (25 bp)
ACTGAACTGTAGCACCTTCTCGCCG
LOC_Os04g17680
Os.38273.2.S1_at--850--8972Chr04:9663872..9664126 (25 bp)
TGAACTGTAGCACCTTCTCGCCGAC
LOC_Os04g17680
Os.38273.2.S1_at--325--5472Chr04:9663873..9664127 (25 bp)
GAACTGTAGCACCTTCTCGCCGACA
LOC_Os04g17680
Os.38273.2.S1_at--600--5012Chr04:9664477..9664501 (25 bp)
GCAGTATTCTCAGAAATATGCTCCC
NONE
Os.38273.2.S1_at--51--1213Chr11:3762504..3762574 (25 bp)
AGTATTCTCAGAAATATGCTCCCAT
NONE
Os.38273.2.S1_at--958--6872Chr04:9664480..9664504 (25 bp)
GTATTCTCAGAAATATGCTCCCATC
NONE
Os.38273.2.S1_at--681--10212Chr04:9664481..9664505 (25 bp)
TATTCTCAGAAATATGCTCCCATCT
NONE
Os.38273.2.S1_at--498--112Chr04:9664482..9664506 (25 bp)
ATTCTCAGAAATATGCTCCCATCTG
NONE
Os.38273.2.S1_at--1044--3732Chr04:9664485..9664509 (25 bp)
CTCAGAAATATGCTCCCATCTGAAT
NONE
Target Sequence 
TGAACTGAACTGTAGCACCTTCTCGCCGACATGGTCGCAGCAAGGAAGCGGATACACTTGAGCACAAGGTGCGGGACAGA
TACGATCTACAATACCTGACGGTGACGAGAGGTACGCACCCACTTGATTTCTGCGTCCTCAGCGGAATAAAAGATGGACC
GAGAATTTTCGTTCAGAGAAATTATATTCAGAGCCCTGAGTGTCATGTTCTCTCGATTTGCATGTGCAGCCCTTTTCATA
TTTTTTTAGTTTGATCGGCTGGACAATTTGATACTTACAGTTGTGTCAAAAGCTCTGAAACGTTACGAAAATTATGGTGC
TTATAGACATCATGCTCTAAATGTCAATTAGAAATATGCCNTTTGCAATTTTGCATGTGTGCAGTATTCTCAGAAATATG
CTCCCATCTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38273.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis