Browse Element(s) Details


Os.35543.1.S1_at

Description gb:AK066975.1
DB_XREF= gi:32976993
TID=Os.35543.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35543 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013090L20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013090L20, full insert sequence.
FL= gb:AK066975.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2441011/11kinesin heavy chain isolog, putative, expressed
LOC_Os04g1770011/11kinesin heavy chain isolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24370NANA4+13948063..13955445retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g24380NANA4+13956780..13957436retrotransposon, putative, centromere-specific
LOC_Os04g24390NANA4+13959475..13962175retrotransposon protein, putative, unclassified
LOC_Os04g24400NANA4+13962813..13963322retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g24410Os.35543.1.S1_at11/114+13964448..13972873kinesin heavy chain isolog, putative, expressed
LOC_Os04g24410OsAffx.26050.3.A1_at11/114+13964448..13972873kinesin heavy chain isolog, putative, expressed
LOC_Os04g24410OsAffx.32229.1.S1_x_at9/114+13964448..13972873kinesin heavy chain isolog, putative, expressed
LOC_Os04g24410OsAffx.28576.1.S1_s_at4/114+13964448..13972873kinesin heavy chain isolog, putative, expressed
LOC_Os04g24410OsAffx.32306.1.S1_x_at1/114+13964448..13972873kinesin heavy chain isolog, putative, expressed
LOC_Os04g24414Os.38273.2.S1_at11/114+13979041..13981278expressed protein
LOC_Os04g24414Os.15576.1.S1_at11/114+13979041..13981278expressed protein
LOC_Os04g24414Os.38273.2.S1_x_at11/114+13979041..13981278expressed protein
LOC_Os04g24420Os.38273.1.S1_at11/114+13980253..13981553expressed protein
LOC_Os04g24430Os.48521.1.S1_at8/114+13983603..13988518Sucrose synthase 2, putative, expressed
LOC_Os04g24430Os.46781.1.S1_at2/114+13983603..13988518Sucrose synthase 2, putative, expressed
LOC_Os04g24440NANA4+13990348..13993368retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g24450OsAffx.31892.5.S1_at2/114+13994825..13999644retrotransposon, putative, centromere-specific
LOC_Os04g24450OsAffx.24431.1.S1_at2/114+13994825..13999644retrotransposon, putative, centromere-specific
LOC_Os04g24450OsAffx.31892.5.S1_x_at2/114+13994825..13999644retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35543.1.S1_at--744--3252Chr04:9676139..9676163 (25 bp)
CAACCCGAATTGATGGACACTCTAA
LOC_Os04g17700
Os.35543.1.S1_at--954--8132Chr04:9676153..9676177 (25 bp)
GGACACTCTAATCCAGTATTCGAAG
LOC_Os04g17700
Os.35543.1.S1_at--907--6492Chr04:9677621..9677645 (25 bp)
GATAGATGGTTTGAGGGCCTCCTTT
LOC_Os04g17700
Os.35543.1.S1_at--333--8432Chr04:9677636..9677660 (25 bp)
GGCCTCCTTTCCAAAGACATTTCAG
LOC_Os04g17700
Os.35543.1.S1_at--774--492Chr04:9678478..9678497 (20 bp)
ATCGTCAGGAACTGCGGAAGCTCGT
LOC_Os04g17700
Os.35543.1.S1_at--217--8192Chr04:9678488..9678512 (25 bp)
GGAAGCTCGTGAGGACAGTCCACAT
LOC_Os04g17700
Os.35543.1.S1_at--1124--1312Chr04:9678543..9678567 (25 bp)
AGAGGAATCTACCATGAAGCTTTTG
LOC_Os04g17700
Os.35543.1.S1_at--272--10672Chr04:9678592..9678616 (25 bp)
TTCCTTCGCTCCATTGCTAAGGAGG
LOC_Os04g17700
Os.35543.1.S1_at--417--10052Chr04:9678631..9678655 (25 bp)
TAGATTTACTCACTTCTCTTCTAGA
LOC_Os04g17700
Os.35543.1.S1_at--375--3112Chr04:9678689..9678713 (25 bp)
AATATTGGCCCAAATGGCCCTGCTT
LOC_Os04g17700
Os.35543.1.S1_at--932--7052Chr04:9678742..9678766 (25 bp)
GTAAGGGCGCACTGTGTATGTCAGA
LOC_Os04g17700
Target Sequence 
CAACCCGAATTGATGGACACTCTAATCCAGTATTCGAAGGATGGCGATGATAACAGGTTACTTGCATTAATGAGTGAAAA
TACATTCTTGATGGAAGATGAGGAAATAGAGGACTTGCCTTGCAATGAAGAAGAGGGTGACAAAGAGCATATTGAAATTG
CAGATAGATGGTTTGAGGGCCTCCTTTCCAAAGACATTTCAGTTACTAATGAAATTTATGCGATACATAATGTTGAGTTT
GATCGTCAGGAACTGCGGAAGCTCGTGAGGACAGTCCACATGGTCCAAGATAATATAGAAAATGAACATGAAGAGGAATC
TACCATGAAGCTTTTGGGAGCAAAGAAACAACTTTTGTGCTTCCTTCGCTCCATTGCTAAGGAGGCATACGTCAAATCAT
AGATTTACTCACTTCTCTTCTAGATGGTTCTAAAATGCTTTGTTATTCAGTTGTAGAAATATTGGCCCAAATGGCCCTGC
TTTTTTTTAGACTCATGTACTTTATTTAAAGTAAGGGCGCACTGTGTATGTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35543.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis