Browse Element(s) Details


OsAffx.18218.1.S1_at

Description gb:NM_195281.1
DB_XREF= gi:37531921
TID=OsAffx.18218.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0040E17.31), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1132011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11280OsAffx.8397.1.S1_at11/1110+6023789..6028093retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g11290NANA10+6030061..6031547retrotransposon protein, putative, unclassified
LOC_Os10g11310Os.46498.1.S1_at11/1110+6037808..6041839expressed protein
LOC_Os10g11310Os.46498.2.S1_x_at7/1110+6037808..6041839expressed protein
LOC_Os10g11320OsAffx.18218.1.S1_at11/1110+6048125..6048670expressed protein
LOC_Os10g11330Os.20602.2.S1_x_at11/1110+6049861..6052041hAT family dimerisation domain containing protein
LOC_Os10g11340OsAffx.18219.1.S1_at10/1110+6052816..6055864nitroreductase family protein, putative
LOC_Os10g11354Os.26859.1.S1_at11/1110+6060932..6066946MATE efflux family protein, expressed
LOC_Os10g11370OsAffx.18220.1.S1_x_at11/1110+6069281..6072434Protease inhibitor/seed storage/LTP family protein
LOC_Os10g11384Os.14491.2.S1_x_at2/1110+6073493..6078421transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11384Os.47463.1.S1_x_at1/1110+6073493..6078421transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18218.1.S1_at--858--371Chr10:6048192..6048216 (25 bp)
ATCAAAATATTTCCCTTCCCAACAT
LOC_Os10g11320
OsAffx.18218.1.S1_at--471--10711Chr10:6048244..6048268 (25 bp)
TTGCGCCGACACTAGAGATTGCCTC
LOC_Os10g11320
OsAffx.18218.1.S1_at--787--10031Chr10:6048256..6048280 (25 bp)
TAGAGATTGCCTCTGTTTCCGACAC
LOC_Os10g11320
OsAffx.18218.1.S1_at--462--1291Chr10:6048291..6048315 (25 bp)
AGATGCCTAATTGGAACGCGCCGCC
LOC_Os10g11320
OsAffx.18218.1.S1_at--1160--7311Chr10:6048320..6048344 (25 bp)
GTGCTCACCTACAATGTTCTCATCA
LOC_Os10g11320
OsAffx.18218.1.S1_at--926--8791Chr10:6048334..6048358 (25 bp)
TGTTCTCATCAAGATTGGCGCGCGC
LOC_Os10g11320
OsAffx.18218.1.S1_at--1094--491Chr10:6048444..6048468 (25 bp)
ATCGGTGCCGTATGCGATGGATCGC
LOC_Os10g11320
OsAffx.18218.1.S1_at--226--2911Chr10:6048497..6048521 (25 bp)
AAGGATGTCACCTGGAACATGGCCA
LOC_Os10g11320
OsAffx.18218.1.S1_at--501--8151Chr10:6048546..6048570 (25 bp)
GGACAAGCATCCACCGGAGATCATC
LOC_Os10g11320
OsAffx.18218.1.S1_at--782--871Chr10:6048583..6048607 (25 bp)
ATGGCCCATGCCGTCAATGGTGGTA
LOC_Os10g11320
OsAffx.18218.1.S1_at--944--2971Chr10:6048598..6048622 (25 bp)
AATGGTGGTATCACTCCGCACCGTG
LOC_Os10g11320
Target Sequence 
ATCAAAATATTTCCCTTCCCAACATCGCTGCCTTCAATGTCGCGCTCAGCGCTTGCGCCGACACTAGAGATTGCCTCTGT
TTCCGACACCTCTGCGACCAGATGCCTAATTGGAACGCGCCGCCTGTCGTGCTCACCTACAATGTTCTCATCAAGATTGG
CGCGCGCCGGCTGCAAGGACCTCATCGCACGCGTCCTCAACCGGATCCTCTCCTCCAGTTTCACCCCCTGTGCCATCACG
CTCTACTCCTTCATCGGTGCCGTATGCGATGGATCGCCGTGCCCGGATACACCCCTCTGGACCTAAAGGATGTCACCTGG
AACATGGCCAAGATGCGGGTGACATCGGTTGCCGGGACAAGCATCCACCGGAGATCATCCGACGGGACGAGATGGCCCAT
GCCGTCAATGGTGGTATCACTCCGCACCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18218.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis