Browse Element(s) Details


OsAffx.18220.1.S1_x_at

Description tigr:9638.m01018
TID=OsAffx.18220.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative proline-rich cell wall protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1137011/11Protease inhibitor/seed storage/LTP family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11320OsAffx.18218.1.S1_at11/1110+6048125..6048670expressed protein
LOC_Os10g11330Os.20602.2.S1_x_at11/1110+6049861..6052041hAT family dimerisation domain containing protein
LOC_Os10g11340OsAffx.18219.1.S1_at10/1110+6052816..6055864nitroreductase family protein, putative
LOC_Os10g11354Os.26859.1.S1_at11/1110+6060932..6066946MATE efflux family protein, expressed
LOC_Os10g11370OsAffx.18220.1.S1_x_at11/1110+6069281..6072434Protease inhibitor/seed storage/LTP family protein
LOC_Os10g11384Os.14491.2.S1_x_at2/1110+6073493..6078421transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11384Os.47463.1.S1_x_at1/1110+6073493..6078421transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11400NANA10+6084040..6088260retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11420NANA10+6090406..6092146retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11430NANA10+6092629..6097128retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0031225cellular_componentanchored to membrane
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18220.1.S1_x_at--893--6631Chr10:6072323..6072347 (25 bp)
GTTGTTCCTCCTTCTCTGCCGACGA
LOC_Os10g11370
OsAffx.18220.1.S1_x_at--5--1831Chr10:6072053..6072077 (25 bp)
ACGCCAGAGGCGAACCTGCCGTGCG
LOC_Os10g11370
OsAffx.18220.1.S1_x_at--921--4131Chr10:6072016..6072040 (25 bp)
CGCCGTGCTCCGAGTTCTACCGGAA
LOC_Os10g11370
OsAffx.18220.1.S1_x_at--473--9971Chr10:6071999..6072023 (25 bp)
TACCGGAACGCGACGGCGAAGCCCA
LOC_Os10g11370
OsAffx.18220.1.S1_x_at--1139--1611Chr10:6071932..6071956 (25 bp)
AGCTGGGATGCCTGTGCTCCGTGCT
LOC_Os10g11370
OsAffx.18220.1.S1_x_at--75--9291Chr10:6071915..6071939 (25 bp)
TCCGTGCTGACGAACCCGGCGATGG
LOC_Os10g11370
OsAffx.18220.1.S1_x_at--165--7931Chr10:6071860..6071884 (25 bp)
GGTTGGATCTGTTCGGGCGCTGCGA
LOC_Os10g11370
OsAffx.18220.1.S1_x_at--448--8391Chr10:6071845..6071869 (25 bp)
GGCGCTGCGACGTCAAGGTTCCCGC
LOC_Os10g11370
OsAffx.18220.1.S1_x_at--645--5751Chr10:6071837..6071861 (25 bp)
GACGTCAAGGTTCCCGCCGACGTGT
LOC_Os10g11370
OsAffx.18220.1.S1_x_at--462--2911Chr10:6071831..6071855 (25 bp)
AAGGTTCCCGCCGACGTGTGCAGCA
LOC_Os10g11370
OsAffx.18220.1.S1_x_at--892--5751Chr10:6071819..6071843 (25 bp)
GACGTGTGCAGCAGCCATGCGCCTG
LOC_Os10g11370
Target Sequence 
GTTGTTCCTCCTTCTCTGCCGACGACGACGCCGCCCGCGCCGACCGTCGTCGCTCCTCCTCTGCCAACGACGCCGCCGCC
GGCCGTCGTTGCCCCTTCTCCTCCTCTGCCGCCGCTGACGCCGCCGCCGGCCATTGTCCCCCCTGCTCTACCGCCGCCGC
CGCCGCTGCCGGCCATCGTCGTTCCACCGGCTCTGCCGCCGACGCCTGCCATTGCTGTTCCTCCTGCCCTGCCGCCGATC
CCGGCCATCGTTCCTCCTTCCCTGCCGCCGACGCCAGAGGCGAACCTGCCGTGCGTGGCGGAGCTGGCGCCGTGCTCCGA
GTTCTACCGGAACGCGACGGCGAAGCCCACGGGCGCGTGCTGCGCGCCGCTGAAGAAGGCGTACGAGAGCGAGCTGGGAT
GCCTGTGCTCCGTGCTGACGAACCCGGCGATGGCCGCCACCGTCGGCGTCGACACGAAGAAGGGGTTGGATCTGTTCGGG
CGCTGCGACGTCAAGGTTCCCGCCGACGTGTGCAGCAGCCATGCGCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18220.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis