Browse Element(s) Details


Os.6292.1.S1_at

Description gb:AK065884.1
DB_XREF= gi:32975902
TID=Os.6292.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6292 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013043L06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043L06, full insert sequence.
FL= gb:AK065884.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3675010/11HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36710OsAffx.3414.1.S1_at10/113+20308741..20312541hypothetical protein
LOC_Os03g36720NANA3+20315374..20317455retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36730Os.4055.1.S1_at11/113+20318154..20324666OST3/OST6 family protein, putative, expressed
LOC_Os03g36730OsAffx.661.1.S1_x_at1/113+20318154..20324666OST3/OST6 family protein, putative, expressed
LOC_Os03g36740NANA3+20329970..20331315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36750Os.6292.1.S1_at10/113+20334252..20341704HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os03g36760Os.53338.1.S1_at10/113+20346177..20351156expressed protein
LOC_Os03g36770OsAffx.13201.1.S1_at11/113+20354442..20354801hypothetical protein
LOC_Os03g36780Os.3921.1.S1_at10/113+20357676..20372137Elongation factor G, mitochondrial precursor, putative, expressed
LOC_Os03g36780OsAffx.13205.1.S1_at1/113+20357676..20372137Elongation factor G, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009231biological_processriboflavin biosynthesis
GO:0003919molecular_functionFMN adenylyltransferase activity
GO:0008531molecular_functionriboflavin kinase activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6292.1.S1_at--286--9931Chr03:20338073..20338097 (25 bp)
TACTGGGCCCTGATCGTGCAGAAAA
LOC_Os03g36750
Os.6292.1.S1_at--143--10291Chr03:20338108..20338132 (25 bp)
TTTGCTGGAGATGTGGTTCCTCGTA
LOC_Os03g36750
Os.6292.1.S1_at--533--1751NONE
ACCTGATCCAGCAATCTACTTACTT
NONE
Os.6292.1.S1_at--868--10471Chr03:20338834..20338858 (25 bp)
TTACTTGCAGCAACCACACTTGGAG
LOC_Os03g36750
Os.6292.1.S1_at--684--1151Chr03:20338857..20339260 (25 bp)
AGTCGATCCATCTAGTTGTGTTGTT
LOC_Os03g36750
Os.6292.1.S1_at--649--5651Chr03:20339267..20339291 (25 bp)
GACAGTACTATAGGGCTTGCAGCAG
LOC_Os03g36750
Os.6292.1.S1_at--953--2151Chr03:20341351..20341375 (25 bp)
ACAGCTGATGCTGTGTTCGATTGCA
LOC_Os03g36750
Os.6292.1.S1_at--199--9391Chr03:20341367..20341391 (25 bp)
TCGATTGCATTGGTGACCCTCCAGA
LOC_Os03g36750
Os.6292.1.S1_at--676--5811Chr03:20341381..20341405 (25 bp)
GACCCTCCAGAAGTACGCTTTGATT
LOC_Os03g36750
Os.6292.1.S1_at--1013--4871Chr03:20341397..20341421 (25 bp)
GCTTTGATTTGGAGTTCTGCGCCAA
LOC_Os03g36750
Os.6292.1.S1_at--638--8071Chr03:20341451..20341475 (25 bp)
GGAGCAGACGGTCAATTTCACCCAT
LOC_Os03g36750
Target Sequence 
TACTGGGCCCTGATCGTGCAGAAAAAATTACCATATTTGCTGGAGATGTGGTTCCTCGTAAAAAACCTGATCCAGCAATC
TACTTACTTGCAGCAACCACACTTGGAGTCGATCCATCTAGTTGTGTTGTTGTTGAAGACAGTACTATAGGGCTTGCAGC
AGCCAAAGCTGCTGGTATGAAGTGTATCGTAACAAAAAGCGGATACACTGCAGAAGAGGACTTTGCAACAGCTGATGCTG
TGTTCGATTGCATTGGTGACCCTCCAGAAGTACGCTTTGATTTGGAGTTCTGCGCCAACCTCCTCCAGAAACAATTTGTA
AGCTGAAGGAGCAGACGGTCAATTTCACCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6292.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis