Browse Element(s) Details


OsAffx.13201.1.S1_at

Description gb:NM_184737.1
DB_XREF= gi:34896563
TID=OsAffx.13201.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0026A15.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3677011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36740NANA3+20329970..20331315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36750Os.6292.1.S1_at10/113+20334252..20341704HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os03g36760Os.53338.1.S1_at10/113+20346177..20351156expressed protein
LOC_Os03g36770OsAffx.13201.1.S1_at11/113+20354442..20354801hypothetical protein
LOC_Os03g36780Os.3921.1.S1_at10/113+20357676..20372137Elongation factor G, mitochondrial precursor, putative, expressed
LOC_Os03g36780OsAffx.13205.1.S1_at1/113+20357676..20372137Elongation factor G, mitochondrial precursor, putative, expressed
LOC_Os03g36790Os.19726.1.S1_x_at11/113+20375383..20380945tobamovirus multiplication protein 3, putative, expressed
LOC_Os03g36790Os.19726.1.S1_at11/113+20375383..20380945tobamovirus multiplication protein 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13201.1.S1_at--152--3611Chr03:20354712..20354736 (25 bp)
CTTGTTACCGCTGCCTACTCGGGAG
LOC_Os03g36770
OsAffx.13201.1.S1_at--464--10451Chr03:20354708..20354732 (25 bp)
TTACCGCTGCCTACTCGGGAGCCGG
LOC_Os03g36770
OsAffx.13201.1.S1_at--708--9291Chr03:20354694..20354718 (25 bp)
TCGGGAGCCGGCCTCCTATGCCGGG
LOC_Os03g36770
OsAffx.13201.1.S1_at--128--9251Chr03:20354681..20354705 (25 bp)
TCCTATGCCGGGGAGGTCAGATACG
LOC_Os03g36770
OsAffx.13201.1.S1_at--117--331Chr03:20354661..20354685 (25 bp)
ATACGGACGAGAGGTGGCCAGATCT
LOC_Os03g36770
OsAffx.13201.1.S1_at--313--7631Chr03:20354630..20354654 (25 bp)
GGGACTCCATATCCGGAGGCACTGC
LOC_Os03g36770
OsAffx.13201.1.S1_at--582--7671Chr03:20354514..20354538 (25 bp)
GGTAGCCAACCCTCAACCTAGCACC
LOC_Os03g36770
OsAffx.13201.1.S1_at--405--7231Chr03:20354480..20354504 (25 bp)
GTCGCAGCCCGAGACCAGATTGAGG
LOC_Os03g36770
OsAffx.13201.1.S1_at--169--4131Chr03:20354478..20354502 (25 bp)
CGCAGCCCGAGACCAGATTGAGGTT
LOC_Os03g36770
OsAffx.13201.1.S1_at--225--3391Chr03:20354476..20354500 (25 bp)
CAGCCCGAGACCAGATTGAGGTTGT
LOC_Os03g36770
OsAffx.13201.1.S1_at--154--1391Chr03:20354469..20354493 (25 bp)
AGACCAGATTGAGGTTGTGGGCTCC
LOC_Os03g36770
Target Sequence 
CTTGTTACCGCTGCCTACTCGGGAGCCGGCCTCCTATGCCGGGGAGGTCAGATACGGACGAGAGGTGGCCAGATCTGGCC
AGGGGACTCCATATCCGGAGGCACTGCCTCCCCATCGTCGCCCTGATCAACACCGCCTCAACCTCGTCATCCCAGTCGAC
TCCGCCTCGCCGTCGACGTTGCCACTCTCCTCACCACCGGTAGCCAACCCTCAACCTAGCACCACCGCGGCCGTCGCAGC
CCGAGACCAGATTGAGGTTGTGGGCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13201.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis