Browse Element(s) Details


Os.3921.1.S1_at

Description gb:AB040051.1
DB_XREF= gi:10129884
GEN=mEF-G
TID=Os.3921.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.3921 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mEF-G mRNA for mitochondrial elongation factor G, complete cds.
PROD=mitochondrial elongation factor G
FL= gb:AK102744.1 gb:AB040051.1 gb:AK122133.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3678010/11Elongation factor G, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36750Os.6292.1.S1_at10/113+20334252..20341704HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os03g36760Os.53338.1.S1_at10/113+20346177..20351156expressed protein
LOC_Os03g36770OsAffx.13201.1.S1_at11/113+20354442..20354801hypothetical protein
LOC_Os03g36780Os.3921.1.S1_at10/113+20357676..20372137Elongation factor G, mitochondrial precursor, putative, expressed
LOC_Os03g36780OsAffx.13205.1.S1_at1/113+20357676..20372137Elongation factor G, mitochondrial precursor, putative, expressed
LOC_Os03g36790Os.19726.1.S1_x_at11/113+20375383..20380945tobamovirus multiplication protein 3, putative, expressed
LOC_Os03g36790Os.19726.1.S1_at11/113+20375383..20380945tobamovirus multiplication protein 3, putative, expressed
LOC_Os03g36810OsAffx.22712.1.S1_at11/113+20389518..20390136hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003746molecular_functiontranslation elongation factor activity
GO:0005525molecular_functionGTP binding
GO:0008135molecular_functiontranslation factor activity, nucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3921.1.S1_at--370--3871Chr03:20369082..20369106 (25 bp)
CTGATGGTGCTTCACATGCAGTGGA
LOC_Os03g36780
Os.3921.1.S1_at--587--7511Chr03:20369102..20369126 (25 bp)
GTGGATTCCAGCGAACTTGCTTTTA
LOC_Os03g36780
Os.3921.1.S1_at--396--6791Chr03:20369272..20369296 (25 bp)
GTTATGCTGCTGCTAGACCTGTAAT
LOC_Os03g36780
Os.3921.1.S1_at--844--9251Chr03:20369330..20369354 (25 bp)
TCCTACAGAGTTCCAGGGCACGGTA
LOC_Os03g36780
Os.3921.1.S1_at--437--4611Chr03:20369737..20369761 (25 bp)
GCGACGACACAGTTGTGGTTTGCCA
LOC_Os03g36780
Os.3921.1.S1_at--233--7491NONE
GTGGTTTGCCATGTTCCACTAAACA
NONE
Os.3921.1.S1_at--806--6511Chr03:20370720..20370744 (25 bp)
GATATTCAACAGCTCTTCGGTCAAT
LOC_Os03g36780
Os.3921.1.S1_at--354--491Chr03:20371748..20371772 (25 bp)
ATCTGGAGCACAATACCGTATCGCA
LOC_Os03g36780
Os.3921.1.S1_at--501--10071Chr03:20371790..20371814 (25 bp)
TAGTGAATACGTACAAGGCCAGCAG
LOC_Os03g36780
Os.3921.1.S1_at--513--9811Chr03:20371857..20371881 (25 bp)
TAACGTTGCATTTTGTGGCCCTTAA
LOC_Os03g36780
Os.3921.1.S1_at--769--7531Chr03:20371871..20371895 (25 bp)
GTGGCCCTTAATGATGCTAGGACAT
LOC_Os03g36780
Target Sequence 
CTGATGGTGCTTCACATGCAGTGGATTCCAGCGAACTTGCTTTTAAGTTAGCTTCTATCTATGCTTTTAGACAGTGTTAT
GCTGCTGCTAGACCTGTAATATTGGAACCAGTGATGAANGTGGAACTAAAAGTTCCTACAGAGTTCCAGGGCACGGTAAC
CGGTGACATGAACAAGAGAAAGGGTATCATTGTTGGAAATGATCAGGAAGGCGACGACACAGTTGTGGTTTGCCATGTTC
CACTAAACAATATGTTTGGATATTCAACAGCTCTTCGGTCAATGACACAGGGGAAAGGTGAATTTTCGATGGAGTATCTG
GAGCACAATACCGTATCGCAGGATGTACAGATGCAACTAGTGAATACGTACAAGGCCAGCAGGGGCACAGAGTAATACAG
AAAAAAATAGAAANAGTCANTTGAGTTAACGTTGCATTTTGTGGCCCTTAATGATGCTAGGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3921.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis