Browse Element(s) Details


Os.11471.1.S1_at

Description gb:AK121265.1
DB_XREF= gi:37990888
TID=Os.11471.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11471 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023105D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023105D11, full insert sequence.
FL= gb:AK121265.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g546108/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54564Os.53855.1.S1_at11/114+32231463..32232743expressed protein
LOC_Os04g54570Os.49525.1.S1_at1/114+32234201..32236150Transferase family protein
LOC_Os04g54580OsAffx.26603.1.S1_at11/114+32237998..32238579hypothetical protein
LOC_Os04g54590Os.5585.1.S1_at11/114+32240544..32241434expressed protein
LOC_Os04g54600Os.4938.1.S1_at11/114+32245869..32246997uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os04g54610Os.11471.1.S1_at8/114+32257548..32258515hypothetical protein
LOC_Os04g54610OsAffx.26604.1.S1_at5/114+32257548..32258515hypothetical protein
LOC_Os04g54620Os.12999.1.S1_at11/114+32259622..32260550expressed protein
LOC_Os04g54630Os.11651.1.S1_at11/114+32261944..32263284expressed protein
LOC_Os04g54640Os.24768.1.S1_x_at11/114+32263959..32266419expressed protein
LOC_Os04g54640OsAffx.4176.1.S1_at11/114+32263959..32266419expressed protein
LOC_Os04g54640Os.7327.1.S1_a_at1/114+32263959..32266419expressed protein
LOC_Os04g54650Os.44554.1.A1_at1/114+32276611..32284480retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g54650Os.27691.1.S1_x_at1/114+32276611..32284480retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11471.1.S1_at--1047--4851Chr04:32257480..32257504 (25 bp)
GCTAGCTAGCTCAGCAAACACTGAA
NONE
Os.11471.1.S1_at--349--5211Chr04:32257502..32257526 (25 bp)
GAATTTTGCGAGCTCCAGATCGAAG
NONE
Os.11471.1.S1_at--365--1491Chr04:32257533..32257557 (25 bp)
AGCAAGCTAACTCCCATGGCCAAGT
NONE
Os.11471.1.S1_at--1083--1951Chr04:32257778..32257798 (21 bp)
ACTGTGCAGCGCGTCGAGATTAGAT
LOC_Os04g54610
Os.11471.1.S1_at--366--4391Chr04:32257830..32257854 (25 bp)
GCCACCGAACAACTAATCAACGCTG
LOC_Os04g54610
Os.11471.1.S1_at--442--271Chr04:32257865..32257889 (25 bp)
ATATGATGCCGTTGCTTTGCCTTGG
LOC_Os04g54610
Os.11471.1.S1_at--576--10291Chr04:32257880..32257904 (25 bp)
TTTGCCTTGGTGATTTTCTAATACG
LOC_Os04g54610
Os.11471.1.S1_at--201--8871Chr04:32257924..32257948 (25 bp)
TGATGTGTGCGAGTACTTTATTCCT
LOC_Os04g54610
Os.11471.1.S1_at--84--2051Chr04:32257938..32257962 (25 bp)
ACTTTATTCCTCTTCGCGTTGTAAT
LOC_Os04g54610
Os.11471.1.S1_at--456--10791Chr04:32257981..32258005 (25 bp)
TTGTCACTGGGTTCCTTTTGTAACT
LOC_Os04g54610
Os.11471.1.S1_at--1059--8651Chr04:32258025..32258049 (25 bp)
TGTGCTGTTTTTCTGTAACGTCCGT
LOC_Os04g54610
Target Sequence 
GCTAGCTAGCTCAGCAAACACTGAATTTTGCGAGCTCCAGATCGAAGCAAGCAAGCAAGCTAACTCCCATGGCCAAGTTC
GCTGCTCAGCTCAAGGACAGGTTTCTCGGCCTCGTCGAGCGCGTCGCCGGCTGCGGCCGCGGCGCCGGAGACAAGGGCGT
CAAGGAACCCACCAAGCTGTCAACTGTGCAGCGCGTCGAGATTAGATCAAGAGATCCTAATGTGTCTGGAGGAGAAAAGC
CACCGAACAACTAATCAACGCTGCACTGAAATNATATGATGCCGTTGCTTTGCCTTGGTGATTTTCTAATACGAAGTAGT
AGTAATTAAATTTGATGTGTGCGAGTACTTTATTCCTCTTCGCGTTGTAATTAAATTTNATGATTTTTTTTGTCACTGGG
TTCCTTTTGTAACTCCAGGAGTGCATATGAGTGTGTGCTGTTTTTCTGTAACGTCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11471.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis