Browse Element(s) Details


OsAffx.26604.1.S1_at

Description tigr:9632.m05307
TID=OsAffx.26604.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g546105/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54564Os.53855.1.S1_at11/114+32231463..32232743expressed protein
LOC_Os04g54570Os.49525.1.S1_at1/114+32234201..32236150Transferase family protein
LOC_Os04g54580OsAffx.26603.1.S1_at11/114+32237998..32238579hypothetical protein
LOC_Os04g54590Os.5585.1.S1_at11/114+32240544..32241434expressed protein
LOC_Os04g54600Os.4938.1.S1_at11/114+32245869..32246997uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os04g54610Os.11471.1.S1_at8/114+32257548..32258515hypothetical protein
LOC_Os04g54610OsAffx.26604.1.S1_at5/114+32257548..32258515hypothetical protein
LOC_Os04g54620Os.12999.1.S1_at11/114+32259622..32260550expressed protein
LOC_Os04g54630Os.11651.1.S1_at11/114+32261944..32263284expressed protein
LOC_Os04g54640Os.24768.1.S1_x_at11/114+32263959..32266419expressed protein
LOC_Os04g54640OsAffx.4176.1.S1_at11/114+32263959..32266419expressed protein
LOC_Os04g54640Os.7327.1.S1_a_at1/114+32263959..32266419expressed protein
LOC_Os04g54650Os.44554.1.A1_at1/114+32276611..32284480retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g54650Os.27691.1.S1_x_at1/114+32276611..32284480retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26604.1.S1_at--6--3891NONE
CTGTCAACTGTGCAGATCTATCTTG
NONE
OsAffx.26604.1.S1_at--1028--8731NONE
TGTCAACTGTGCAGATCTATCTTGA
NONE
OsAffx.26604.1.S1_at--517--7091NONE
GTCAACTGTGCAGATCTATCTTGAA
NONE
OsAffx.26604.1.S1_at--482--9711NONE
TCAACTGTGCAGATCTATCTTGAAA
NONE
OsAffx.26604.1.S1_at--648--3251NONE
CAACTGTGCAGATCTATCTTGAAAT
NONE
OsAffx.26604.1.S1_at--739--2551Chr04:32258454..32258473 (20 bp)
AACTGTGCAGATCTATCTTGAAATG
LOC_Os04g54610
OsAffx.26604.1.S1_at--371--1951Chr04:32258454..32258474 (21 bp)
ACTGTGCAGATCTATCTTGAAATGG
LOC_Os04g54610
OsAffx.26604.1.S1_at--648--3891Chr04:32258454..32258475 (22 bp)
CTGTGCAGATCTATCTTGAAATGGG
LOC_Os04g54610
OsAffx.26604.1.S1_at--1144--8671NONE
TGTGCAGATCTATCTTGAAATGGGT
NONE
OsAffx.26604.1.S1_at--344--7331Chr04:32258454..32258477 (24 bp)
GTGCAGATCTATCTTGAAATGGGTT
LOC_Os04g54610
OsAffx.26604.1.S1_at--910--5031Chr04:32258455..32258479 (25 bp)
GCAGATCTATCTTGAAATGGGTTTC
LOC_Os04g54610
Target Sequence 
CTGTCAACTGTGCAGATCTATCTTGAAATGGGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26604.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis