Browse Element(s) Details


Os.12999.1.S1_at

Description gb:AK063036.1
DB_XREF= gi:32973054
TID=Os.12999.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12999 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-C11, full insert sequence.
FL= gb:AK063036.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5462011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54570Os.49525.1.S1_at1/114+32234201..32236150Transferase family protein
LOC_Os04g54580OsAffx.26603.1.S1_at11/114+32237998..32238579hypothetical protein
LOC_Os04g54590Os.5585.1.S1_at11/114+32240544..32241434expressed protein
LOC_Os04g54600Os.4938.1.S1_at11/114+32245869..32246997uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os04g54610Os.11471.1.S1_at8/114+32257548..32258515hypothetical protein
LOC_Os04g54610OsAffx.26604.1.S1_at5/114+32257548..32258515hypothetical protein
LOC_Os04g54620Os.12999.1.S1_at11/114+32259622..32260550expressed protein
LOC_Os04g54630Os.11651.1.S1_at11/114+32261944..32263284expressed protein
LOC_Os04g54640Os.24768.1.S1_x_at11/114+32263959..32266419expressed protein
LOC_Os04g54640OsAffx.4176.1.S1_at11/114+32263959..32266419expressed protein
LOC_Os04g54640Os.7327.1.S1_a_at1/114+32263959..32266419expressed protein
LOC_Os04g54650Os.44554.1.A1_at1/114+32276611..32284480retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g54650Os.27691.1.S1_x_at1/114+32276611..32284480retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12999.1.S1_at--703--7831Chr04:32259864..32259888 (25 bp)
GGTAAGCAAAGCTTGCCGCTCTGAA
LOC_Os04g54620
Os.12999.1.S1_at--708--1971Chr04:32259891..32259915 (25 bp)
ACTGAACTGAAAACCCCATGCTGAT
LOC_Os04g54620
Os.12999.1.S1_at--818--8331Chr04:32259993..32260017 (25 bp)
GGCTGCATATGTGAATCGACCTGTG
LOC_Os04g54620
Os.12999.1.S1_at--1132--5011Chr04:32260075..32260099 (25 bp)
GCAGGTGTAGATGAGCCCAGCAAGT
LOC_Os04g54620
Os.12999.1.S1_at--401--2791Chr04:32260167..32260191 (25 bp)
AAGAGGCGTAGATCCCTCCGTGTCA
LOC_Os04g54620
Os.12999.1.S1_at--129--4431Chr04:32260203..32260227 (25 bp)
GCCAGGGATCAATGCGGCCGGTATC
LOC_Os04g54620
Os.12999.1.S1_at--391--671Chr04:32260244..32260268 (25 bp)
ATGAACTGAACAACTGTGTCCCCTT
LOC_Os04g54620
Os.12999.1.S1_at--359--6611Chr04:32260299..32260323 (25 bp)
GATTGTGAGCGTGCTGTGTTACTAC
LOC_Os04g54620
Os.12999.1.S1_at--573--1231Chr04:32260355..32260379 (25 bp)
AGTTCCTCTCTGTTCCAGTGTGTTT
LOC_Os04g54620
Os.12999.1.S1_at--674--7471Chr04:32260372..32260396 (25 bp)
GTGTGTTTCTCTGATGTACTTGTCA
LOC_Os04g54620
Os.12999.1.S1_at--9--7031Chr04:32260387..32260411 (25 bp)
GTACTTGTCATCATGCATGGTTCAT
LOC_Os04g54620
Target Sequence 
GGTAAGCAAAGCTTGCCGCTCTGAAAAACTGAACTGAAAACCCCATGCTGATAAAGGGAGTAGAGCGACTGAAGGCAATA
AATCTCTGAAGAAACTCAAGAACCTGATATTTTCAGATAAAAGGATTGAGGCTGCATATGTGAATCGACCTGTGAAGATT
TACTGATGCTGCATGAATGCTAATGACGTGAAGGTTTTGTTTGCTGTTTCTGCAGGTGTAGATGAGCCCAGCAAGTTGGC
ATCTGAAGAGGTTGCAGTAAGCAGCGAAGAGGTTGTGATTGTACAGCGCAATGAGATCAGATCAAGAGGCGTAGATCCCT
CCGTGTCAGGCGGGAAACAGCCAGGGATCAATGCGGCCGGTATCTAGAGGGGATGATTTGATGAACTGAACAACTGTGTC
CCCTTGAGTTCTCAAGTACTACTAGTAGTTTATATGATTGTGAGCGTGCTGTGTTACTACTATTGTTTGCTTGTGTATCT
CAACCTCACTGAGTTCCTCTCTGTTCCAGTGTGTTTCTCTGATGTACTTGTCATCATGCATGGTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12999.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis