Browse Element(s) Details


Os.11651.1.S1_at

Description gb:AK070786.1
DB_XREF= gi:32980809
TID=Os.11651.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11651 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023064M09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023064M09, full insert sequence.
FL= gb:AK070786.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5463011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54580OsAffx.26603.1.S1_at11/114+32237998..32238579hypothetical protein
LOC_Os04g54590Os.5585.1.S1_at11/114+32240544..32241434expressed protein
LOC_Os04g54600Os.4938.1.S1_at11/114+32245869..32246997uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os04g54610Os.11471.1.S1_at8/114+32257548..32258515hypothetical protein
LOC_Os04g54610OsAffx.26604.1.S1_at5/114+32257548..32258515hypothetical protein
LOC_Os04g54620Os.12999.1.S1_at11/114+32259622..32260550expressed protein
LOC_Os04g54630Os.11651.1.S1_at11/114+32261944..32263284expressed protein
LOC_Os04g54640Os.24768.1.S1_x_at11/114+32263959..32266419expressed protein
LOC_Os04g54640OsAffx.4176.1.S1_at11/114+32263959..32266419expressed protein
LOC_Os04g54640Os.7327.1.S1_a_at1/114+32263959..32266419expressed protein
LOC_Os04g54650Os.44554.1.A1_at1/114+32276611..32284480retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g54650Os.27691.1.S1_x_at1/114+32276611..32284480retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g54690NANA4+32285640..32288903retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009765biological_processphotosynthesis, light harvesting
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0016168molecular_functionchlorophyll binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11651.1.S1_at--741--6431Chr04:32262847..32262871 (25 bp)
GATCAGCTGCATGTGTGAAGCAAAC
LOC_Os04g54630
Os.11651.1.S1_at--1069--3511Chr04:32262884..32262908 (25 bp)
CATGATTTCATCATCGTCGATTCAC
LOC_Os04g54630
Os.11651.1.S1_at--792--7211Chr04:32262899..32262923 (25 bp)
GTCGATTCACAGACGCATGGCGCAT
LOC_Os04g54630
Os.11651.1.S1_at--794--391Chr04:32262941..32262965 (25 bp)
ATCATCAGATGGGATCCGGCCCACA
LOC_Os04g54630
Os.11651.1.S1_at--346--4271Chr04:32262956..32262980 (25 bp)
CCGGCCCACAGGATAGGATGCAGAT
LOC_Os04g54630
Os.11651.1.S1_at--423--6331Chr04:32262972..32262996 (25 bp)
GATGCAGATCTAGATGGTTCAGACT
LOC_Os04g54630
Os.11651.1.S1_at--101--5251Chr04:32262999..32263023 (25 bp)
GAATCATCGTACACAGATCCTGTAG
LOC_Os04g54630
Os.11651.1.S1_at--678--8431Chr04:32263042..32263066 (25 bp)
GGCCTATCATTACAACTTCGCAATC
LOC_Os04g54630
Os.11651.1.S1_at--888--10631Chr04:32263058..32263082 (25 bp)
TTCGCAATCTGCATGGGAGTTCATT
LOC_Os04g54630
Os.11651.1.S1_at--1079--10331Chr04:32263116..32263140 (25 bp)
TTTTTGGTCTAGCAAGGGAGTCCTG
LOC_Os04g54630
Os.11651.1.S1_at--556--7651Chr04:32263131..32263155 (25 bp)
GGGAGTCCTGAATATGGCTGTGAAA
LOC_Os04g54630
Target Sequence 
GATCAGCTGCATGTGTGAAGCAAACTTTTGCAAGTTTCATGATTTCATCATCGTCGATTCACAGACGCATGGCGCATGCA
GAGATATGATTCAGATCATCAGATGGGATCCGGCCCACAGGATAGGATGCAGATCTAGATGGTTCAGACTTAGAATCATC
GTACACAGATCCTGTAGATGGTTTTGGAAGGGTNCGGCCTATCATTACAACTTCGCAATCTGCATGGGAGTTCATTAGTC
TGAATTCTGAGAGCAGATCTAAGGTTTGTTTTTTGGTCTAGCAAGGGAGTCCTGAATATGGCTGTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11651.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis