Browse Element(s) Details


OsAffx.4176.1.S1_at

Description tigr:9632.m05311
TID=OsAffx.4176.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5464011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54590Os.5585.1.S1_at11/114+32240544..32241434expressed protein
LOC_Os04g54600Os.4938.1.S1_at11/114+32245869..32246997uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os04g54610Os.11471.1.S1_at8/114+32257548..32258515hypothetical protein
LOC_Os04g54610OsAffx.26604.1.S1_at5/114+32257548..32258515hypothetical protein
LOC_Os04g54620Os.12999.1.S1_at11/114+32259622..32260550expressed protein
LOC_Os04g54630Os.11651.1.S1_at11/114+32261944..32263284expressed protein
LOC_Os04g54640Os.24768.1.S1_x_at11/114+32263959..32266419expressed protein
LOC_Os04g54640OsAffx.4176.1.S1_at11/114+32263959..32266419expressed protein
LOC_Os04g54640Os.7327.1.S1_a_at1/114+32263959..32266419expressed protein
LOC_Os04g54650Os.44554.1.A1_at1/114+32276611..32284480retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g54650Os.27691.1.S1_x_at1/114+32276611..32284480retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g54690NANA4+32285640..32288903retrotransposon protein, putative, unclassified
LOC_Os04g54700NANA4+32289519..32295661retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4176.1.S1_at--926--10251Chr04:32264218..32264242 (25 bp)
TTTGAATCTTCTGGTTTTGTAGGTC
LOC_Os04g54640
OsAffx.4176.1.S1_at--1036--10731Chr04:32264217..32264241 (25 bp)
TTGAATCTTCTGGTTTTGTAGGTCC
LOC_Os04g54640
OsAffx.4176.1.S1_at--516--9011Chr04:32264216..32264240 (25 bp)
TGAATCTTCTGGTTTTGTAGGTCCT
LOC_Os04g54640
OsAffx.4176.1.S1_at--1046--5231Chr04:32264215..32264239 (25 bp)
GAATCTTCTGGTTTTGTAGGTCCTA
LOC_Os04g54640
OsAffx.4176.1.S1_at--167--3071Chr04:32264214..32264238 (25 bp)
AATCTTCTGGTTTTGTAGGTCCTAT
LOC_Os04g54640
OsAffx.4176.1.S1_at--878--431Chr04:32264213..32264237 (25 bp)
ATCTTCTGGTTTTGTAGGTCCTATT
LOC_Os04g54640
OsAffx.4176.1.S1_at--911--9551Chr04:32264212..32264236 (25 bp)
TCTTCTGGTTTTGTAGGTCCTATTT
LOC_Os04g54640
OsAffx.4176.1.S1_at--587--9451Chr04:32264209..32264233 (25 bp)
TCTGGTTTTGTAGGTCCTATTTTCG
LOC_Os04g54640
OsAffx.4176.1.S1_at--570--271Chr04:32263992..32264016 (25 bp)
ATATGTGTTTTCTAGTGTATGACAC
LOC_Os04g54640
OsAffx.4176.1.S1_at--422--791Chr04:32263990..32264014 (25 bp)
ATGTGTTTTCTAGTGTATGACACTT
LOC_Os04g54640
OsAffx.4176.1.S1_at--591--8671Chr04:32263989..32264013 (25 bp)
TGTGTTTTCTAGTGTATGACACTTG
LOC_Os04g54640
Target Sequence 
TTTGAATCTTCTGGTTTTGTAGGTCCTATTTTCGGCATCACTTCTGAAGAACAATAAAGCAGCTCATGAAGCTCTCATGT
CTGCCATGTCGCAGAAGGCCAGTGTCTTGGGCTGCATCGAAGCCATAGAGAATGCCTCTTGATTGTAATGGAACGTTGAA
TGTCCTAACACGGTTGAAATTGATGAAAATGAGAAAAATATAAAAGTCAAGATATGAAGAAAAAGGATATGTGTTTTCTA
GTGTATGACACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4176.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis