Browse Element(s) Details


OsAffx.26603.1.S1_at

Description tigr:9632.m05304
TID=OsAffx.26603.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5458011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54520Os.43567.1.S1_x_at1/114+32210964..32213616retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g54530NANA4+32216915..32218487Zinc knuckle family protein
LOC_Os04g54540NANA4+32219518..32220413hypothetical protein
LOC_Os04g54550OsAffx.4175.1.S1_at11/114+32226334..32226864expressed protein
LOC_Os04g54560Os.49525.1.S1_at8/114+32229429..32231261Transferase family protein, expressed
LOC_Os04g54564Os.53855.1.S1_at11/114+32231463..32232743expressed protein
LOC_Os04g54570Os.49525.1.S1_at1/114+32234201..32236150Transferase family protein
LOC_Os04g54580OsAffx.26603.1.S1_at11/114+32237998..32238579hypothetical protein
LOC_Os04g54590Os.5585.1.S1_at11/114+32240544..32241434expressed protein
LOC_Os04g54600Os.4938.1.S1_at11/114+32245869..32246997uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os04g54610Os.11471.1.S1_at8/114+32257548..32258515hypothetical protein
LOC_Os04g54610OsAffx.26604.1.S1_at5/114+32257548..32258515hypothetical protein
LOC_Os04g54620Os.12999.1.S1_at11/114+32259622..32260550expressed protein
LOC_Os04g54630Os.11651.1.S1_at11/114+32261944..32263284expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26603.1.S1_at--136--8391Chr04:32238034..32238058 (25 bp)
GGCGACGCCTATGTCGCTGAGCCAG
LOC_Os04g54580
OsAffx.26603.1.S1_at--255--6691Chr04:32238071..32238095 (25 bp)
GTTCCAGTGCAAATCGGCCTCGTCG
LOC_Os04g54580
OsAffx.26603.1.S1_at--1128--911Chr04:32238186..32238210 (25 bp)
AGGCTACAGCCCCAGGATGTCCATC
LOC_Os04g54580
OsAffx.26603.1.S1_at--19--3491Chr04:32238198..32238222 (25 bp)
CAGGATGTCCATCGACATGGCGTGC
LOC_Os04g54580
OsAffx.26603.1.S1_at--268--9371Chr04:32238209..32238233 (25 bp)
TCGACATGGCGTGCACGCACAGCTG
LOC_Os04g54580
OsAffx.26603.1.S1_at--394--1591Chr04:32238229..32238253 (25 bp)
AGCTGGGCGCCCTACACGGCCGTAA
LOC_Os04g54580
OsAffx.26603.1.S1_at--623--5791Chr04:32238292..32238316 (25 bp)
GACGAACACTCTCCCGGCGTGGCGA
LOC_Os04g54580
OsAffx.26603.1.S1_at--616--1051Chr04:32238389..32238413 (25 bp)
AGGTGTACGTCTGCCTGGATCGCGC
LOC_Os04g54580
OsAffx.26603.1.S1_at--433--9871Chr04:32238427..32238451 (25 bp)
TACATCCAGAGCATCCAGAGGAACG
LOC_Os04g54580
OsAffx.26603.1.S1_at--367--7631Chr04:32238476..32238500 (25 bp)
GGGACAAGACCAAAGCGTGCGACAG
LOC_Os04g54580
OsAffx.26603.1.S1_at--1039--2351Chr04:32238487..32238511 (25 bp)
AAAGCGTGCGACAGCTACCTGAGCG
LOC_Os04g54580
Target Sequence 
GGCGACGCCTATGTCGCTGAGCCAGCCTCGCCCATCCGTTCCAGTGCAAATCGGCCTCGTCGTCCGAGCGCCAGCCGCGA
CGAGGTTCCCCGCTACGTCCTTCGCGTCATCCGCACCGCAGCCGCCGCCTCCGCCTCGCTGCCTCCCGTCCCAGGCTACA
GCCCCAGGATGTCCATCGACATGGCGTGCACGCACAGCTGGGCGCCCTACACGGCCGTAATCCCGGCCCTCCGCTCCCTC
TCCTTCCTGTCTCTCCGGGACGAACACTCTCCCGGCGTGGCGAAGAAGACGATCGCCGAGCTCTACGGCCACGCCACGCC
GTTCGACGCCGCCGGCCGCCGGTTCCCCGCCGGCGAGGTGTACGTCTGCCTGGATCGCGCCCCGCTCGCCAGCTACATCC
AGAGCATCCAGAGGAACGTGACGGTGTCGGATGTGTCGTACGGGGACAAGACCAAAGCGTGCGACAGCTACCTGAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26603.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis